LOCUS       NM_001409087            2108 bp    mRNA    linear   PLN 08-JUL-2022
DEFINITION  Oryza sativa Japonica Group protein IQ-DOMAIN 1 (LOC4327410), mRNA.
ACCESSION   NM_001409087
VERSION     NM_001409087.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2108)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK072219.1, AK103458.1 and CF317813.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK072219.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03003175 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-428               AK072219.1         1-428
            429-431             AK103458.1         390-392
            432-765             AK072219.1         432-765
            766-770             AK103458.1         1227-1231
            771-1909            AK072219.1         771-1909
            1910-2108           CF317813.1         1-199               c
FEATURES             Location/Qualifiers
     source          1..2108
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..2108
                     /gene="LOC4327410"
                     /note="protein IQ-DOMAIN 1"
                     /db_xref="GeneID:4327410"
     exon            1..72
                     /gene="LOC4327410"
                     /inference="alignment:Splign:2.1.0"
     exon            73..203
                     /gene="LOC4327410"
                     /inference="alignment:Splign:2.1.0"
     exon            204..318
                     /gene="LOC4327410"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    223..225
                     /gene="LOC4327410"
                     /note="upstream in-frame stop codon"
     CDS             241..1743
                     /gene="LOC4327410"
                     /note="Os01g0833800; P0460C04.27-1; putative SF16 protein"
                     /codon_start=1
                     /product="protein IQ-DOMAIN 1"
                     /protein_id="NP_001396016.1"
                     /db_xref="GeneID:4327410"
                     /translation="

MGKKGNWFSAVKKVFSSSDPDGREAKIEKADKSRSRRKWPFGKSKKSDPWTSTVAVPTSTAPPPQPPPPPPTHPIQPQPEEIKDVKAVETDSEQNKHAYSVALASAVAAEAAAVAAQAAAEVVRLTTATTAVPKSPVSSKDELAAIKIQTAFRGYLARRALRALRGLVRLKSLVDGNAVKRQTAHTLHCTQTMTRVQTQIYSRRVKMEEEKQALQRQLQLKHQRELEKMKIDEDWDHSHQSKEQVETSLMMKQEAALRRERALAYAFSHQWKNSGRTITPTFTDQGNPNWGWSWMERWMTSRPWESRVISDKDPKDHYSTKNPSTSASRTYVPRAISIQRPATPNKSSRPPSRQSPSTPPSRVPSVTGKIRPASPRDSWLYKEDDLRSITSIRSERPRRQSTGGASVRDDASLTSTPALPSYMQSTESARAKSRYRSLLTDRFEVPERVPLVHSSIKKRLSFPVADKPNGEHADKLMERGRRHSDPPKVDPASLKDVPVS"

     misc_feature    1432..>1650
                     /gene="LOC4327410"
                     /note="Protein of unknown function (DUF4005); Region:
                     DUF4005; pfam13178"
                     /db_xref="CDD:404128"
     exon            319..708
                     /gene="LOC4327410"
                     /inference="alignment:Splign:2.1.0"
     exon            709..930
                     /gene="LOC4327410"
                     /inference="alignment:Splign:2.1.0"
     exon            931..1050
                     /gene="LOC4327410"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..2094
                     /gene="LOC4327410"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcgaggaaagtaaaaaaaaaaaaaggagagaagaaaaaaaaacaggttgggttatccaccatttccgcctcttagaagcagggggagggacggtgggcggtggcttgggagggaggcaggggcggggcggctcgagttaggtttcttggcggcttcagttgggcgaggaaggtgagcggctttcggtggttggttgctttgaggctttagctgaagacacaataaaggaacaccaaaaaaatgggtaagaaaggaaattggttcagtgctgtcaagaaagtcttcagctcatccgatccagatgggagggaagctaagatcgagaaggcggacaagtcgagatccaggaggaaatggccatttggaaagtctaagaagtctgatccttggacctcaacagtggcagtgcctacctctacagcaccgcctccacagccgccaccgccaccgccaacacaccctatccagccacagcctgaggagatcaaagatgtcaaggctgttgaaactgacagtgaacagaacaagcatgcgtactctgttgcacttgcctctgctgttgctgcagaagctgctgccgtcgctgcccaggccgctgctgaggtggtccgcctcacaacagccaccacggctgtgccgaaatcgcctgttagttcaaaggatgagcttgccgctatcaagattcagactgccttcaggggttatctggcaagaagagcgctgcgagcacttagagggctagttagattgaagtcgctggttgatggaaacgccgtcaaacgacaaactgcgcacaccttgcattgcacacaaaccatgaccagagttcaaactcaaatatactctagaagggtgaagatggaggaggaaaaacaggctcttcaaaggcagctacaattaaagcatcagagggaacttgagaaaatgaagattgatgaagattgggatcatagccatcagtccaaggagcaggttgagaccagcctaatgatgaaacaagaagctgcgctaaggcgggaaagagctcttgcctatgcattttctcaccagtggaagaattctggccgaactataacacctaccttcacggatcaagggaatcctaactggggatggagctggatggaacgctggatgacatcaaggccttgggagagccgagtgatatcagataaggatcctaaggaccattattcaacaaagaatcccagcactagcgcttctcgtacttatgtaccccgcgcaatctcaatccagagacctgcaacaccaaacaagtcaagccgtccaccaagtcggcaatcgccatcaactcccccgtcaagggtcccctcagttaccggaaagatcagaccagcaagtccacgggatagctggctatataaggaggatgacttgaggagcatcacaagcatacgctctgaacgcccaaggaggcagagcacaggtggtgcctctgttcgggatgatgcgagcctaacaagcacaccagctctccccagctacatgcagtccacagagtctgcaagggcgaagtctcggtaccgcagtctattgactgacaggtttgaggttcctgagagagtacccctggtccattcttcaataaagaagcgcttatccttcccagtcgcagacaaaccaaatggtgagcatgcagataagctgatggaaagagggaggcgtcattcagaccctcctaaggtggatcctgcctcactgaaggatgttccggtttcataattcagtcatattatcagagcttattattgttaggttgcttttcttcctttgtgtattttctaatttagattgcattctcgagagtcgaggttgaaccctccgtgaaaatgtatgatttgtcagggttgatttgagacaattctaactgtttacaggcagtttttttcctgatgattgttgtgtgtgaagagtaagaaaaagaaaatgaagcggtggaaaaaaatggtggtgtgttctaatattgtgtgtgcttctcttccaatgtacaatactccatgaactatgggttgacctattaattgtaagacatgggtttttctggttatgaaatatgtgtgcccgatgtgctgaaaaaaaaaaaaaaa

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