LOCUS       NM_001409086            1553 bp    mRNA    linear   PLN 10-JUL-2022
DEFINITION  Oryza sativa Japonica Group WUSCHEL-related homeobox 5
            (LOC4327390), mRNA.
ACCESSION   NM_001409086 XM_015788740
VERSION     NM_001409086.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AP014957.1,
            CI256108.1 and CI251669.1.
            
            On Jul 8, 2022 this sequence version replaced XM_015788740.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CI256108.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMN07270525
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-802               AP014957.1         36059129-36059930   c
            803-873             CI256108.1         1-71
            874-1070            CI251669.1         1-197
            1071-1553           CI256108.1         269-751
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..1553
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /note="WUSCHEL-related homeobox 5"
                     /db_xref="GeneID:4327390"
     exon            1..847
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    76..78
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /note="upstream in-frame stop codon"
     CDS             364..1305
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /note="P0408C03.23; putative WOX2 protein; LOC_Os01g62310;
                     Protein WOX2"
                     /codon_start=1
                     /product="wUSCHEL-related homeobox 5"
                     /protein_id="NP_001396015.1"
                     /db_xref="GeneID:4327390"
                     /translation="

METTTTTLGGGGGGRAGGFSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQKQQSFDYFSKLFRRPPPLPVLHRPLARPFPLAMAPTAMPPPPPPPATTTTAACNAGGVMFRTPSFMPVATNNASYYPQQQTPLLYPGMEVCPHDKSTAQPPATTTMYLQAPPSSAHLAAAAGRGAAEAEGHGRRGGGAGGRETLQLFPLQPTFVLPDHKPLRAGSACAAVSPTTPSASASFSWESESSDSPSSEAPPFYDFFGVHSGGR"

     misc_feature    364..459
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8LR86.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    493..657
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(499..501,634..636,643..648,655..657)
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1033..1104
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8LR86.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1174..1302
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8LR86.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            848..1549
                     /gene="LOC4327390"
                     /gene_synonym="OsWOX5; WOX5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tacgcccttgatccatcgattggagtaccgacgacgatgcatgcacgcatggatggatcacgccactcgccgtggtgatctacgcggcgcacggcacaggggcggcacgcgactcctcccgtcctcacgaaaacgtcgaaacgtacgctccccttgaccgcaacgcgacacgatccccacgctagctacgcctccccctgccgcccgcgcgcgcgcacacgcgctacggcccacccatcgcccacctcctcacactcccatgcacgcttaaaaaccacgcacccgcggccgctcgcaggcagcaaacgcatcacaaacgcgagcgggcgagccgagcgagcgcgaccaaagtcagagcaagccatggagacgacgacgacgacgttgggcggcggcggcggcgggcgggcgggaggcttctccgatccgccgtctccgctctcgccgccgctgtcgccggcctcggcggcggcggcggcgctggcgaacgcgcggtggacgccgaccaaggagcagatcgcggtgctggaggggctgtaccggcaggggctgcgcacgccgaccgccgagcagatacagcagatcacggcgaggctccgggagcacggccacattgagggcaagaacgtgttctactggttccagaaccacaaggcccggcagcggcagaagcagaagcagcagagcttcgactacttcagcaagctgttccgccgcccgccgccgctgcccgtgctccacaggccactcgcgcggcccttccctctcgccatggcgccgacggcgatgccaccgccgccgccgccgccggcgacgacgacgacggccgcatgcaacgccggtggtgtgatgttcaggacgccaagcttcatgccggtcgcgacaaataacgccagctactacccgcagcagcagacgccgttgctgtacccagggatggaagtgtgtccgcacgacaagtccacggcgcagccaccggccaccaccaccatgtacctgcaggcaccgccgagcagcgcacacctcgcggcggcggctggccgcggcgcggcggaagcggaaggccatggccgccgcggcggcggcgccggtgggcgcgagaccctccagctgttccccctgcagcccaccttcgtgctgccggatcacaagccgctccgcgccgggagcgcctgcgccgccgtgtccccgacgacgccgtccgcgtccgcgtcgttctcgtgggagtcggagagctcggacagccccagcagcgaggcgcctccgttctacgacttcttcggcgtccattctggaggccgctgagcgtgaaggtgagagtgagtgagcgtagagtggagtggagtggagtggaagttgatatcttcatgagtggacgaacccgtcgtgctttttgaaacttatctgcattgttgcatcgatcattgcatggtttaattggttaagggattggaaggtgtactgcttcatcaacttgaagtgtttcattggaatggaatgatgcatgttttgaggcggctgtgctctcacaatttgttcgtgctctcaaaaaa

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