LOCUS       NM_001406341            2348 bp    mRNA    linear   PLN 31-DEC-2022
DEFINITION  Oryza sativa Japonica Group WUSCHEL-related homeobox 8-like
            (LOC4327441), mRNA.
ACCESSION   NM_001406341 XM_015770969
VERSION     NM_001406341.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Minh-Thu PT, Kim JS, Chae S, Jun KM, Lee GS, Kim DE, Cheong JJ,
            Song SI, Nahm BH and Kim YK.
  TITLE     A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought
            Tolerance and Triggers Early Flowering in Rice
  JOURNAL   Mol Cells 41 (8), 781-798 (2018)
   PUBMED   30078233
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI740584.1, AK102788.1, AK068585.1, CI125118.1 and CI560755.1.
            
            On May 13, 2022 this sequence version replaced XM_015770969.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK068585.1, AK059910.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-345               CI740584.1         4-348
            346-787             AK102788.1         358-799
            788-1641            AK068585.1         83-936
            1642-1950           CI125118.1         1-309
            1951-2348           CI560755.1         1-398
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..2348
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /note="WUSCHEL-related homeobox 8-like"
                     /db_xref="GeneID:4327441"
     exon            1..944
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    473..475
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /note="upstream in-frame stop codon"
     CDS             743..1546
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /note="P0454H12.31; putative HB2 homeodomain protein;
                     LOC_Os01g60270; Protein WOX13"
                     /codon_start=1
                     /product="WUSCHEL-related homeobox 8"
                     /protein_id="NP_001393270.1"
                     /db_xref="GeneID:4327441"
                     /translation="

MEWDKAKASSGEAVDDRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKKPKSDRPLHQNIAMRDHNSERISEMHHFDTEHEQIRRMMYASNDSSSRSSGSLGQMSFYDNVMSNPRIDHFLGKVESPGSFPHMRSGESFDMY"

     misc_feature    order(1010..1021,1025..1027,1079..1081,1097..1099,
                     1148..1150,1154..1159,1166..1171,1175..1183,1187..1192)
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1013..1015,1022..1024,1157..1159,1166..1171,
                     1178..1180)
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1016..1189
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    1184..1327
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5QMM3.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            945..1463
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /inference="alignment:Splign:2.1.0"
     exon            1464..2348
                     /gene="LOC4327441"
                     /gene_synonym="OsJ_03880; OsWOX13; OsWOX8; WOX8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tgctcctacaaagacactgccacattccttctccttcctcctgcatactgtctctctctctctctctatctgatcagctgttccgcttcctcctcttcttctctcccccaaccccgtagccctcccacccatcgagccaggcggcggcgcgacggccggtggctaaggcggcggccggtgccaaaatctcgagcaatcgcgtcgcgccgtctggccggcttgcgacatcgctcgcccgagagcgtcgtcgtcttcgagcttgtgccgcgcggcgccgtcgccgcgtggtccgagggccccgtgccaccgcgtgcagagggcagaggcccatcgcctcctcctcgagccaccgcgctgccgtgtgccgtcccccttgtcgtcctcgagcccctgcgtcgccgccggccgccggggctcctcctcctcgtcctcctcgtcatcgacgccccaatcggcaccgcctcctggtcgttaaaaccatcctcgggcctttcgccaattggaaggcgccatcttttccgcattctttccatccggattccggccgctgttgctgtctggcggaatatctgtttcgccagattttcttgcgtttcgatttctttttattattttcctgagagagagagagagagagagagagagagagagagagagagagagagagagagggttccttccatttcgctgctgcgccaaagaacacaactttcccaattccttttcgcctccctgtagaggcatggagtgggacaaggccaaggcgtcctccggcgaggcggtggacgacaggggcggaggggaaggagggctcgggtacgtgaaggtgatgacggacgagcagatggaggtgctccggaagcagatctccatctacgccaccatctgcgagcagctcgtcgagatgcaccgcgccctcaccgcgcagcaggactccattgcaggaatgaggcttggtaatctgtactgtgatcctctaatggttcccggaggtcacaagatcacagcaaggcagcgatggacaccaaccccaatgcagttgcagattcttgagaacatctttgaccaaggcaatggaacaccaagcaagcaaaagataaaggacataacagcagagctctcacagcatggccagatctcagagacaaatgtctataactggttccagaacaggcgggcacgatcgaaacggaagcaagctgctttaccaaataataatgcagaatctgaagctgaagcggatgaggagtccccaactgacaaaaaacccaaatcagataggccgcttcaccagaacatagccatgagagatcacaatagcgaaaggatctcggagatgcaccactttgacacggagcatgagcaaatccgtcgtatgatgtatgcatccaatgacagtagctcgcgatcgtcaggcagtttgggccagatgtccttctacgacaatgttatgtcaaatccaagaatcgatcatttccttggtaaggtggagagccccgggagcttcccccacatgcgatccggtgaaagctttgatatgtattgatgacgcggcaattctggattctggttactaggttcgttgcattagacaccatactgttttcccctgtaaaaagtgaagctggtaacttgccgttcattttgcttactgaaattgcgaagtttgccttacgtccacacgttggttatcatggtcttgtcgacattctacggagaatagctagttctagtgtaaacctgttctgttgctgaattagctgcaagaagccgataaatagcactctgcacacttaggtgttaggtgattgtgtggatatttcttgatggtgagtttgtaacgatcttctttcactttgtcctgaaggctgaatcgatcagcgctacaaatgagttagtagttttaaaggttgctcttgtccatggtaaagcttttggtctgataaagtctcatgatcgcgttgccatctgccagaaaattggagtttcttcgattgtgaagatcattgagttggagattagacaatgcttgttgatgatactatgggcatgttggcaagtggcatggtttgccagattttgactaaaccaaatgttgcttcttgactatgtacaatcctctatagcttcaatgagcagttttccctatgttgtcctcataggatttgccttacactatagtttgaaaggactatgatctactagctatacaaattctcggaatgcatcgtatcgtttagatgggcaaatggaatcatgaaaccggtactgtattcattagcctttgaaccattgtatttatttaggttcattagccttctgttatgtattgagcttagatattttgc

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