LOCUS       NM_001404898            3845 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group protein argonaute 1B-like (LOC9270411),
            transcript variant 2, mRNA.
ACCESSION   NM_001404898 XM_015780806
VERSION     NM_001404898.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3845)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3845)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI607904.1, AK111587.1, CB649652.1, CF312777.1, CB664150.1 and
            EG710909.1.
            
            On Apr 15, 2022 this sequence version replaced XM_015780806.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK111587.1, AK111504.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020310 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-234               CI607904.1         2-235
            235-2146            AK111587.1         146-2057
            2147-2764           CB649652.1         1-618
            2765-3037           CF312777.1         40-312
            3038-3378           CB664150.1         431-771             c
            3379-3845           EG710909.1         9-475
FEATURES             Location/Qualifiers
     source          1..3845
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3845
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="protein argonaute 1B-like"
                     /db_xref="GeneID:9270411"
     exon            1..219
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    24..26
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="upstream in-frame stop codon"
     exon            220..1007
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     CDS             228..3533
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="isoform 2 is encoded by transcript variant 2;
                     LOC_Os04g47870; OSJNBa0005N02.3; protein argonaute 1B"
                     /codon_start=1
                     /product="protein argonaute 1B isoform 2"
                     /protein_id="NP_001391827.1"
                     /db_xref="GeneID:9270411"
                     /translation="

MVKKKRTGSGSTGESSGEAPGAPGHGSSQRAERGPQQHGGGRGWVPQHGGRGGGQYQGRGGHYQGRGGQGSHHPGGGPPEYQGRGGPGSHHPGGGPPDYQGRGGSGSHHPGGGPPEYQPRDYQGRGGPRPRGGMPQPYYGGPRGSGGRSVPSGSSRTVPELHQAPHVQYQAPMVSPTPSGAGSSSQPAAEVSSGQVQQQFQQLATRDQSSTSQAIQIAPPSSKSVRFPLRPGKGTYGDRCIVKANHFFAELPDKDLHQYDVSITPEVTSRGVNRAVMFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTRYSPVGRSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELSFPVDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILRTVSHNAYHEDQYAQEFGIKIDERLASVEARVLPPPRLKYHDSGREKDVLPRVGQWNMMNKKMVNGGRVNNWACINFSRNVQDSAARGFCHELAIMCQISGMDFALEPVLPPLTARPEHVERALKARYQDAMNMLRPQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPHRGTVTGGMIKELLISFKRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC"

     misc_feature    <678..887
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="Glycine-rich region of argonaut; Region:
                     Gly-rich_Ago1; pfam12764"
                     /db_xref="CDD:432767"
     misc_feature    879..3530
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     exon            1008..1228
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1378
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..1512
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1513..1622
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1623..1729
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1730..1868
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1869..1985
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1986..2093
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2094..2165
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2166..2288
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2289..2454
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2455..2576
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2577..2714
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2715..2857
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2858..2920
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2921..2984
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2985..3120
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            3121..3194
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            3195..3289
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            3290..3321
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            3322..3839
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agcgtgtgcctcaccgctgctgctaattaaccgcaagcgctcgtcgtctttccccttcctcaaaaaagggggagggggggtggtggaggcggaggcggaggcagcagcagcagtgcggtagtgcaagcgctagtggaggagttgggaggaggccccctagggtttcccgagaccgcctccccccgcgcctgcgccgccgctcgccgagcgcgcgctccgtgcccatcatggtgaagaagaaaagaactgggtctggcagcaccggtgagagttctggagaggctccaggagctcctggccatggttcttcacagcgagctgagagaggtcctcaacagcatgggggaggacgtggttgggtgcctcaacatggtggccgtggtggtgggcaataccagggccgtggtggacattatcagggccgtggagggcaaggttcacaccatccaggtggagggcctcctgagtatcagggtcgtggagggccaggttcacatcatccaggtggtgggcctcctgactatcagggccgtggaggatcaggttcacatcacccaggtggtgggcctcccgagtatcaaccgcgtgactatcaaggacgtggtggtccacgccccagaggtggaatgccacagccatactatggcggacctagggggagtggcggacgtagtgttccttcaggttcatcaagaacagttcccgagctgcaccaagccccacatgtccaataccaagccccgatggtttcaccaaccccatcgggagctggctcatcctctcagcctgcggcggaggtgagcagtggacaagtccaacaacagtttcagcaacttgccacccgtgatcaaagttcgaccagccaagccattcaaatagcaccaccgtcaagcaaatcagttagattcccgttgcgccctggcaagggtacatatggggacaggtgcattgtgaaggcgaaccatttctttgctgaacttcctgataaagaccttcaccaatacgacgtatctattactcctgaggttacttcacgtggcgtgaatcgtgctgttatgtttgagttagtaacgctgtatagatattcccatttgggcgggcgtctacctgcctatgatggaaggaagagtctttacacagctggaccattgccatttgcttctaggacatttgaaattactcttcaagatgaggaagatagtcttggtggtggccaaggcacccaaaggcgtgagagactatttagggtggtgatcaagtttgctgcccgtgctgatcttcaccatttggctatgtttctagctggaaggcaagcagatgctcctcaagaagcccttcaagtccttgacattgtgttacgtgaattgcctaccacaaggtactcaccagttggtcggtcattttattctcccaatttagggagacgccagcaacttggtgagggtttggaaagttggcgtggtttttaccaaagcataaggcctacccagatgggtctctcactgaatattgatatgtcatcaactgcatttattgagcctctacctgtgattgactttgttgctcagcttctgaacagagacatctcagttagaccattatctgattctgatcgtgtgaagataaagaaagctctaagaggtgtgaaggttgaggtgacgcatagaggaaacatgcgtagaaaatatcgtatatctggactcacttcacaggcaacaagggagttatcattccctgtcgatgatcgtggtactgtgaagactgtggtgcaatattttctggagacatatggttttagtattcagcacaccactttgccttgccttcaagtgggcaatcagcaaaggcccaattatctgcctatggaggtttgtaagatcgttgagggacagcgttactcgaagcggcttaacgagaaacagattactgcgctattgaaagtgacttgccagcgacctcaagagcgtgaactggatattttgcggactgtatctcacaatgcataccatgaagatcagtatgcgcaggaatttggcataaaaattgatgagcgtcttgcatctgttgaagctcgtgttctgcctcccccaaggcttaaataccatgatagtgggagagaaaaggatgtattgccgagagttggccagtggaacatgatgaataagaaaatggtcaatggtgggagagtcaacaactgggcatgtattaacttctctagaaatgtgcaagatagtgctgccaggggcttctgtcatgagctggctatcatgtgccaaatatctggaatggattttgcactggaacctgtgctgcccccacttactgctagacctgaacatgtggaaagagcactgaaggcacgctatcaagatgcaatgaacatgctcagaccgcagggcagggaacttgatttactgattgtaatactgcctgacaataatggttctctttatggggatctcaaaagaatctgtgagactgatcttggattggtctcccaatgttgtttgacaaaacatgtttttaaaatgagcaagcagtatcttgcaaatgttgcccttaaaataaacgttaaggtggggggaaggaatactgtacttgtggatgctttgacaaggaggattccccttgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggagaagattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaagtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaaagtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcatttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgtcagcgaggggcagttttatcaagttttgttgtatgagcttgatgccattagaaaggcttgtgcatccctggaacccaactatcagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttgctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctggaactgttgttgactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagagacatctgacagtggatcaatggcgagtggagctgcaacgagccgtggccttccaccaggtgtgcgcagcgccagggttgctggaaatgtagccgtcaggcctctacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaagagcttgggctgtaccccgtatgcgccaaggaatgtagtactatgttatgttattttagcacttgcactctgtcgttgatcccgttaaaacgggtatgctaccataagctgttggactattctgggtattgtagtactacttgttttgtatttgtgtttgtgacgctgcagagcgtgaacaacgcaagtctggtacttgtatcgttgtgtttgtgggaacctaaatcttgttggacctttgttgtgcttgaagaaccaagttaaataatcctgtcagtatagggatttaattgctgcttggcataaaaaaaa

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