LOCUS       NM_001404897            3812 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group protein argonaute 1B-like (LOC9270411),
            transcript variant 1, mRNA.
ACCESSION   NM_001404897 XM_015780805
VERSION     NM_001404897.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3812)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI739238.1, AK111587.1, CB649652.1, CF312777.1, CB664150.1 and
            EG710909.1.
            
            On Apr 15, 2022 this sequence version replaced XM_015780805.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00008650, SAMD00020310
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-342               CI739238.1         1-342
            343-2113            AK111587.1         287-2057
            2114-2731           CB649652.1         1-618
            2732-3004           CF312777.1         40-312
            3005-3345           CB664150.1         431-771             c
            3346-3812           EG710909.1         9-475
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3812
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="protein argonaute 1B-like"
                     /db_xref="GeneID:9270411"
     exon            1..186
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    123..125
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="upstream in-frame stop codon"
     CDS             144..3500
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="isoform 1 is encoded by transcript variant 1;
                     LOC_Os04g47870; OSJNBa0005N02.3; protein argonaute 1B"
                     /codon_start=1
                     /product="protein argonaute 1B isoform 1"
                     /protein_id="NP_001391826.1"
                     /db_xref="GeneID:9270411"
                     /translation="

MALQLENGRPHHHQVPIMVKKKRTGSGSTGESSGEAPGAPGHGSSQRAERGPQQHGGGRGWVPQHGGRGGGQYQGRGGHYQGRGGQGSHHPGGGPPEYQGRGGPGSHHPGGGPPDYQGRGGSGSHHPGGGPPEYQPRDYQGRGGPRPRGGMPQPYYGGPRGSGGRSVPSGSSRTVPELHQAPHVQYQAPMVSPTPSGAGSSSQPAAEVSSGQVQQQFQQLATRDQSSTSQAIQIAPPSSKSVRFPLRPGKGTYGDRCIVKANHFFAELPDKDLHQYDVSITPEVTSRGVNRAVMFELVTLYRYSHLGGRLPAYDGRKSLYTAGPLPFASRTFEITLQDEEDSLGGGQGTQRRERLFRVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLRELPTTRYSPVGRSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVAQLLNRDISVRPLSDSDRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELSFPVDDRGTVKTVVQYFLETYGFSIQHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPQERELDILRTVSHNAYHEDQYAQEFGIKIDERLASVEARVLPPPRLKYHDSGREKDVLPRVGQWNMMNKKMVNGGRVNNWACINFSRNVQDSAARGFCHELAIMCQISGMDFALEPVLPPLTARPEHVERALKARYQDAMNMLRPQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPHRGTVTGGMIKELLISFKRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC"

     misc_feature    144..668
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XSA2.3);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    <645..854
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="Glycine-rich region of argonaut; Region:
                     Gly-rich_Ago1; pfam12764"
                     /db_xref="CDD:432767"
     misc_feature    705..881
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XSA2.3);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    846..3497
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     exon            187..974
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1195
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1345
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1346..1479
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1480..1589
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1590..1696
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1697..1835
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1836..1952
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            1953..2060
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2061..2132
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2133..2255
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2256..2421
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2422..2543
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2544..2681
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2682..2824
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2825..2887
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2888..2951
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            2952..3087
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            3088..3161
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            3162..3256
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            3257..3288
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
     exon            3289..3806
                     /gene="LOC9270411"
                     /gene_synonym="AGO1B; OsAGO1b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tcccatcacgctactgctcccgcccccatctctcacccttcttcccctagctaccccctgctcacggagaaagacaacccagtcgggtcggtaattccgctccatttccagcgcgcgccgcatgaacgatcggtgatctcgacatggcgctgcagttggagaatggccgtccccatcatcatcaagtgcccatcatggtgaagaagaaaagaactgggtctggcagcaccggtgagagttctggagaggctccaggagctcctggccatggttcttcacagcgagctgagagaggtcctcaacagcatgggggaggacgtggttgggtgcctcaacatggtggccgtggtggtgggcaataccagggccgtggtggacattatcagggccgtggagggcaaggttcacaccatccaggtggagggcctcctgagtatcagggtcgtggagggccaggttcacatcatccaggtggtgggcctcctgactatcagggccgtggaggatcaggttcacatcacccaggtggtgggcctcccgagtatcaaccgcgtgactatcaaggacgtggtggtccacgccccagaggtggaatgccacagccatactatggcggacctagggggagtggcggacgtagtgttccttcaggttcatcaagaacagttcccgagctgcaccaagccccacatgtccaataccaagccccgatggtttcaccaaccccatcgggagctggctcatcctctcagcctgcggcggaggtgagcagtggacaagtccaacaacagtttcagcaacttgccacccgtgatcaaagttcgaccagccaagccattcaaatagcaccaccgtcaagcaaatcagttagattcccgttgcgccctggcaagggtacatatggggacaggtgcattgtgaaggcgaaccatttctttgctgaacttcctgataaagaccttcaccaatacgacgtatctattactcctgaggttacttcacgtggcgtgaatcgtgctgttatgtttgagttagtaacgctgtatagatattcccatttgggcgggcgtctacctgcctatgatggaaggaagagtctttacacagctggaccattgccatttgcttctaggacatttgaaattactcttcaagatgaggaagatagtcttggtggtggccaaggcacccaaaggcgtgagagactatttagggtggtgatcaagtttgctgcccgtgctgatcttcaccatttggctatgtttctagctggaaggcaagcagatgctcctcaagaagcccttcaagtccttgacattgtgttacgtgaattgcctaccacaaggtactcaccagttggtcggtcattttattctcccaatttagggagacgccagcaacttggtgagggtttggaaagttggcgtggtttttaccaaagcataaggcctacccagatgggtctctcactgaatattgatatgtcatcaactgcatttattgagcctctacctgtgattgactttgttgctcagcttctgaacagagacatctcagttagaccattatctgattctgatcgtgtgaagataaagaaagctctaagaggtgtgaaggttgaggtgacgcatagaggaaacatgcgtagaaaatatcgtatatctggactcacttcacaggcaacaagggagttatcattccctgtcgatgatcgtggtactgtgaagactgtggtgcaatattttctggagacatatggttttagtattcagcacaccactttgccttgccttcaagtgggcaatcagcaaaggcccaattatctgcctatggaggtttgtaagatcgttgagggacagcgttactcgaagcggcttaacgagaaacagattactgcgctattgaaagtgacttgccagcgacctcaagagcgtgaactggatattttgcggactgtatctcacaatgcataccatgaagatcagtatgcgcaggaatttggcataaaaattgatgagcgtcttgcatctgttgaagctcgtgttctgcctcccccaaggcttaaataccatgatagtgggagagaaaaggatgtattgccgagagttggccagtggaacatgatgaataagaaaatggtcaatggtgggagagtcaacaactgggcatgtattaacttctctagaaatgtgcaagatagtgctgccaggggcttctgtcatgagctggctatcatgtgccaaatatctggaatggattttgcactggaacctgtgctgcccccacttactgctagacctgaacatgtggaaagagcactgaaggcacgctatcaagatgcaatgaacatgctcagaccgcagggcagggaacttgatttactgattgtaatactgcctgacaataatggttctctttatggggatctcaaaagaatctgtgagactgatcttggattggtctcccaatgttgtttgacaaaacatgtttttaaaatgagcaagcagtatcttgcaaatgttgcccttaaaataaacgttaaggtggggggaaggaatactgtacttgtggatgctttgacaaggaggattccccttgtcagtgacagaccaactatcatatttggtgcggatgttactcatcctcatcctggagaagattccagtccttccattgcagctgtggttgcttctcaagactggcctgaagtcactaagtatgctggattggtgagtgcccaagcccatcgtcaagaattgatacaagatcttttcaaagtatggcaagacccgcatagaggaactgttactggtggcatgatcaaggagcttctcatttctttcaagagggctactggacagaaacctcagaggataatattttacagggatggtgtcagcgaggggcagttttatcaagttttgttgtatgagcttgatgccattagaaaggcttgtgcatccctggaacccaactatcagcctccagttacctttgtggtggtccagaagcggcatcacacaaggttgtttgctaataatcacaacgaccagcgtactgttgatagaagtggaaacattctgcctggaactgttgttgactcaaagatttgccatccaaccgagtttgatttctacctgtgtagccatgctggcatacagggaacaagccgtcctgctcattatcatgttctgtgggatgagaacaaatttactgcagacgagttgcaaaccctcacgaacaacttgtgctacacgtatgcaaggtgcactcgctctgtatcaattgtgcctcctgcgtactatgctcatctggcagccttccgagctcgcttttacatggagccagagacatctgacagtggatcaatggcgagtggagctgcaacgagccgtggccttccaccaggtgtgcgcagcgccagggttgctggaaatgtagccgtcaggcctctacctgctctcaaggaaaacgtgaagcgtgtcatgttttactgctaagagcttgggctgtaccccgtatgcgccaaggaatgtagtactatgttatgttattttagcacttgcactctgtcgttgatcccgttaaaacgggtatgctaccataagctgttggactattctgggtattgtagtactacttgttttgtatttgtgtttgtgacgctgcagagcgtgaacaacgcaagtctggtacttgtatcgttgtgtttgtgggaacctaaatcttgttggacctttgttgtgcttgaagaaccaagttaaataatcctgtcagtatagggatttaattgctgcttggcataaaaaaaa

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