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2024-04-29 23:12:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001403846             995 bp    mRNA    linear   PLN 02-JUL-2023
DEFINITION  Oryza sativa Japonica Group 60S ribosomal protein L9-like
            (LOC4347422), mRNA.
ACCESSION   NM_001403846 XM_015756605
VERSION     NM_001403846.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI584067.1, CA999129.1 and CI184058.1.
            
            On Apr 5, 2022 this sequence version replaced XM_015756605.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CI165728.1, CI188329.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN02298008, SAMN02716059
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-292               CI584067.1         2-293
            293-495             CA999129.1         74-276
            496-995             CI184058.1         1-500
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="9"
                     /map="9"
     gene            1..995
                     /gene="LOC4347422"
                     /gene_synonym="OsJ_29817; RPL9; YK426"
                     /note="60S ribosomal protein L9-like"
                     /db_xref="GeneID:4347422"
     exon            1..477
                     /gene="LOC4347422"
                     /gene_synonym="OsJ_29817; RPL9; YK426"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..687
                     /gene="LOC4347422"
                     /gene_synonym="OsJ_29817; RPL9; YK426"
                     /note="ribosomal L9-like protein; LOC_Os09g31180; 60S
                     ribosomal protein L9"
                     /codon_start=1
                     /product="large ribosomal subunit protein uL6"
                     /protein_id="NP_001390775.1"
                     /db_xref="GeneID:4347422"
                     /translation="
MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITEDA"
     misc_feature    115..684
                     /gene="LOC4347422"
                     /gene_synonym="OsJ_29817; RPL9; YK426"
                     /note="60S ribosomal protein L6; Provisional; Region:
                     PTZ00027"
                     /db_xref="CDD:240234"
     exon            478..600
                     /gene="LOC4347422"
                     /gene_synonym="OsJ_29817; RPL9; YK426"
                     /inference="alignment:Splign:2.1.0"
     exon            601..991
                     /gene="LOC4347422"
                     /gene_synonym="OsJ_29817; RPL9; YK426"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
atattaaaagcccactcctccccgcgccgccgcccttctctcgagcaagcacccaaaccctcccctctaccccgccgccgccgccgaggaaggggcaagaggaagccggcgaagatgaagaccatcctggcgtccgagacgatggagatcccggagggggtgacggtgcaggtcgccgcgaaggtggtgacggtggagggcccccgcgggaagctgacccgcaacttcaagcacctcaacctcgacttccagctgctggagggcggccgcaagctgcaggtggacgcgtggttcggcacccgccgcaccatggccgccatccgcaccgccatctcccacgtccagaacctcatcaccggcgtcaccaagggctaccgctacaagatgcgcttcgtctacgctcacttccccatcaacgcctccatcaccaactccaacaccgccatcgagatcaggaacttcttgggcgagaagaaggtgaggaaggttgacatgctcgagggggtgaccatcttgcggtcggagaaggtgaaggacgagctcgtcctcgacggcaacgacatcgagctcgtctctcgctcagcagccctcatcaaccagaaatgccacgtgaagaacaaggatatcaggaagttcttggatggtatctacgtgagcgacaagggtaccatcacagaggatgcgtaaactcctatcttcacctagtatcatgaagtgctgtttcttgtctcccgtgtctgatcatcctctgagttgcaattttctgagagactgaattttgtaatggtgggttatttaggatgtaatggagcatggtatcttatcctacatattgtttctgtttgcgattatgaagtctatttatcatcccctaaagacagtttactggaagcattcgtggttagataaacagcataatgctacttaaaagtgtgagctggtatgttttcccctgcgtatgatggattgcaaactggaggagtgtttttccaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]