LOCUS       NM_001402992            1628 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 12
            (LOC4342320), mRNA.
ACCESSION   NM_001402992 XM_015790631
VERSION     NM_001402992.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Cui X, Zhang Z, Wang Y, Wu J, Han X, Gu X and Lu T.
  TITLE     TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell
            fate
  JOURNAL   New Phytol 221 (1), 326-340 (2019)
   PUBMED   30151833
  REMARK    GeneRIF: OSH15 cell-to-cell movement is regulated by TWI1.
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Yoon J, Cho LH, Antt HW, Koh HJ and An G.
  TITLE     KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin
            Biosynthesis Genes
  JOURNAL   Plant Physiol 174 (1), 312-325 (2017)
   PUBMED   28351912
  REMARK    GeneRIF: Data show that homeobox protein OSH15 (OSH15) messenger
            RNAs were abundant in the abscission zone (AZ) during spikelet
            development.
REFERENCE   3  (bases 1 to 1628)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
REFERENCE   4  (bases 1 to 1628)
  AUTHORS   Ito Y, Eiguchi M and Kurata N.
  TITLE     Expression of novel homeobox genes in early embryogenesis in rice
  JOURNAL   Biochim Biophys Acta 1444 (3), 445-450 (1999)
   PUBMED   10095070
REFERENCE   5  (bases 1 to 1628)
  AUTHORS   Sato Y, Sentoku N, Nagato Y and Matsuoka M.
  TITLE     Isolation and characterization of a rice homebox gene, OSH15
  JOURNAL   Plant Mol Biol 38 (6), 983-998 (1998)
   PUBMED   9869405
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI775917.1, FJ940208.1, CI279055.1 and AB007623.1.
            
            On Mar 24, 2022 this sequence version replaced XM_015790631.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB007623.1, AB016071.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-386               CI775917.1         1-386
            387-732             FJ940208.1         302-647
            733-1186            CI279055.1         1-454
            1187-1628           AB007623.1         1185-1626
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="7"
                     /map="7"
     gene            1..1628
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="homeobox protein knotted-1-like 12"
                     /db_xref="GeneID:4342320"
     exon            1..529
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    134..136
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="upstream in-frame stop codon"
     CDS             191..1258
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="KNOX class 1 homeodomain protein; KNOX class
                     homeodomain protein; OSJNBa0088O14.22; Homeobox protein
                     HOS3; Homeobox protein OSH15; Homeobox protein
                     knotted-1-like 3; LOC_Os07g03770"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 12"
                     /protein_id="NP_001389921.1"
                     /db_xref="GeneID:4342320"
                     /translation="

MDQSFGNLGGGGGAGGSGKAAASSFLQLPLSTAAAATAYYGTPLALHQAAAAAGPSQYHGHGHPHHGGGHHHSKHGGAGGGEISAAEAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPGRHDARDPELDQFMEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMADGMYRLGS"

     misc_feature    344..436
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="propagated from UniProtKB/Swiss-Prot (O80416.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    458..577
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    605..745
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    809..889
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="propagated from UniProtKB/Swiss-Prot (O80416.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    896..961
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    1019..1135
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            530..640
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /inference="alignment:Splign:2.1.0"
     exon            641..797
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /inference="alignment:Splign:2.1.0"
     exon            798..1051
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /inference="alignment:Splign:2.1.0"
     exon            1052..1628
                     /gene="LOC4342320"
                     /gene_synonym="HOS3; OSH15; Oskn3; P0483E09.2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtagtatacacctccacctttcccttccattaatacctccaccccccactcctctcccccatctcccctccctctcgccattggagctagacagctcgagctccaggaggaagaagagagagagcctagctgctagggtttccatcggatttggttttttattttctttttgtttcttgtgtgtgttttgatggatcagagctttgggaatcttggaggaggaggaggagcaggggggagcggcaaggcggcggcgtcgtcgttcctgcagctgccgctgtccacggcggcggcggccaccgcgtactacggcacgccgctcgccttgcaccaggcggcggccgcggctggcccgtcgcagtaccacggtcacggtcacccccaccacggcggcggccaccaccacagcaagcacggcggcgccggtggtggggagatctcggcggcggaggccgagtccatcaaggccaagatcatggcgcacccccagtactccgccctcctcgcagcctacctcgactgccagaaagtcggagcgccgccggaggtgctggagaggctgaccgccacggcggcaaagctggacgcccgccctcccggccgccacgacgcgcgcgacccggagctcgaccagttcatggaggcgtactgcaacatgctggccaagtacagggaggagctgacgcggccgatcgacgaggccatggagttcctcaagagggtggagtcgcagctcgacaccatcgccggcggcgcccatggcggcggcgccggctcggcgcgcctcctcctcgccgatggtaaatctgaatgtgttggttcttctgaggatgacatggacccaagtggccgcgaaaacgagccgcctgagatcgacccgcgcgctgaggataaggagctcaagtttcagcttctgaagaagtacagtggctacttgagcagcctaaggcaagaattttccaagaaaaagaagaaaggaaagctgcctaaggaggccaggcagaagctgcttcactggtgggagctgcactacaagtggccttacccctcagagacggagaagattgcgcttgcggaatcgacaggactagatcagaagcagatcaacaactggttcatcaaccagaggaaacggcactggaagccatcggaggacatgccgttcgtcatgatggaaggttttcacccacagaatgctgctgcattgtacatggatggcccgttcatggcagatggaatgtaccgcctcggttcgtgaacctcgatctcgatcatcggcgtgtttgatgagagatccaatgccaagataaattgatcatggaatgtattcagcatgcgttgcaatgcatggacattgttatggaatttttggtttatttacctttcaccgtggattgacaaggtctcgatcatgttagtgttgatggcttatagttctccagtaatgttgttgtttttcctttcgatggcttgtaaaagtttaggtgtatcggaatttcgatcaacttgctcgtacgctggtaattaatttggtgatggtctatatgttgtatggttgtgcgtttcagattggtgttcaaagttgcctatctgaaacaattatatatatttatattgcttctcatttt

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