LOCUS       NM_001402967            3757 bp    mRNA    linear   PLN 24-MAR-2022
DEFINITION  Oryza sativa Japonica Group protein argonaute 1D-like (LOC4342138),
            mRNA.
ACCESSION   NM_001402967 XM_015787025
VERSION     NM_001402967.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3757)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK122176.1, AK111500.1, CI079194.1 and CI396034.1.
            
            On Mar 24, 2022 this sequence version replaced XM_015787025.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK122176.1, AK111500.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2397              AK122176.1         2-2398
            2398-2657           AK111500.1         2380-2639
            2658-3011           AK122176.1         2659-3012
            3012-3475           CI079194.1         28-491
            3476-3643           AK122176.1         3477-3644
            3644-3757           CI396034.1         326-439
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..3757
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /note="protein argonaute 1D-like"
                     /db_xref="GeneID:4342138"
     exon            1..216
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            217..849
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    235..237
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /note="upstream in-frame stop codon"
     CDS             238..3354
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /note="OSJNBa0069C14.10-2; OSJNBa0069C14.10-1; putative
                     AGO1 homologous protein; LOC_Os06g51310"
                     /codon_start=1
                     /product="protein argonaute 1D"
                     /protein_id="NP_001389896.1"
                     /db_xref="GeneID:4342138"
                     /translation="

MGSRRPRLPGFGEDCEPRGGGRGGGGRGRGSYYPQAQQYHPQGHGGRGGAGYYHGAAPQPRGAMVVQQWRPATAAAEHLGHQQPYNSSVRPQHYYGPSAIAPELLQAMDAPHEPPANVSSPEAASPEASSPRSLALEVTEQLQDLSVQYQLSESQEEIVQHVPVSTKSFKFPHRPGSGSIGTRCLVKANHFFAQLPDKDLHQYDVSITPELTSRIRSRAVMEELVRLHKMSYLGGRLPAYDGRKSLYTAGPLPFTSKEFRISLLEEDDGSGSERRQKTYNVVIKFAARADLHRLEQFLAGRQAEAPQEALQVLDIVLRELPTARYAPFGRSFFSPDLGRRRSLGEGLETWRGFYQSIRPTQMGLSLNIDMSATAFFEPLPVIDFVIQLLNTDIRSRPLSDAERVKIKKALRGVKVGVTHRGNMRRKYRISGLTSQATRELTFPVDQGGTVKSVVQYFQETYGFAIQHTYLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNQNQIRALLEETCQRPHDRERDIIQMVNHNSYHEDPYAKEFGIKISERLALVEARILPAPRLKYNETGREKDCLPRVGQWNMMNKKMVNGGRVRSWICVNFARNVQESVASGFCRELARMCQASGMDFALEPVLPSMYARPDQVERALKARFHDAMNILGPQHKELDLLIGLLPDNNGSLYGDLKRICEIDLGLVSQCCCTKQVFKMNKQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQSHRQELIDDLYNITHDPHRGPICGGMVRELLISFKRSTGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMESDSSDSGSMASGRGGGSSTSRSTRAAGGGAVRPLPALKDSVKNVMFYC"

     misc_feature    238..411
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5Z5B2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    565..642
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5Z5B2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    757..3351
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     misc_feature    3211..3300
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5Z5B2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            850..1058
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1208
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..1342
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..1452
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1453..1559
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1560..1698
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..1815
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1816..1923
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1924..1995
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            1996..2118
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            2119..2284
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            2285..2406
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            2407..2544
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            2545..2687
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            2688..2750
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            2751..2814
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            2815..2950
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            2951..3024
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            3025..3119
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            3120..3151
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
     exon            3152..3757
                     /gene="LOC4342138"
                     /gene_synonym="AGO1D; OsAGO1d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggtagaagcagaggtaagcagggcagagagtagaaacaggagcactgcattactggtagtgggagcgtaaagctctctcctctcttcttcttcttcttcttggcgttttccctcatctccttctactagtactagtacatcaccctcccactcttcttcatcttccgcccagcgaggttcgtctggatgtgagctgaatctctccgtctgcccaagttgattgagttggtcgactgaatgggatcaaggagaccaagactgcctgggtttggtgaggactgtgagcctcgtggtggtgggagaggaggaggtggccgtggccgtggcagctactacccacaggcacagcaataccacccacaaggacatggtggccgtggaggagcaggctactaccatggtgctgctcctcaacctcgcggcgcaatggtggtgcagcaatggcgtcctgctactgctgctgctgagcatttgggccatcaacagccctacaacagcagtgtgagaccacagcactattatggtccgtctgccatagctcccgagctgctccaagcaatggatgctccacatgagcctcctgccaatgtctcctcaccagaagcagcctctccggaggcatcatcaccacggtctcttgctcttgaggtcacagagcagcttcaggacttgtctgtgcagtaccaattaagtgagagccaggaagagattgtccaacatgttcctgtgtccaccaaatcatttaaatttcctcaccgccctggaagtgggagtattggaaccagatgtttagtgaaggcgaatcacttctttgctcaactgccagacaaggatcttcatcagtatgacgtttcaatcaccccggagcttacatcacgaattcggagccgtgctgtgatggaagagttggtgagactgcacaagatgtcatacttgggaggacgtcttccagcctatgatggtaggaagagcctttacacggccggtccattgccgtttacttcaaaagaatttcgcatctctttgcttgaggaagatgatggttctggttcggagaggcgtcagaaaacatataacgtggtgattaagtttgctgcaagagctgatcttcaccgtcttgagcaatttctagctggaaggcaggcagaggctccccaggaggccttgcaagttcttgatattgtcttgcgagagttgccaacagcaagatatgcaccctttggtcgatccttcttctctcctgacctggggaggagacgatccctcggtgagggactagaaacctggcgtgggttttatcagagcattcgtcctactcaaatgggcttgtcactgaatattgatatgtcggcaactgctttctttgagccgttaccagtcatagattttgtcatacagcttttaaatactgacatccgctcgaggcccttatcagatgctgagcgtgtcaagatcaagaaggccttaagaggagtgaaggtaggagttactcaccgtggcaacatgcgccggaagtatcggatatctggtttgacatctcaggcaactcgggaactgacttttcctgttgatcaaggaggcacagtgaaatctgttgtacaatattttcaagagacatatggatttgcgatccagcatacctatcttccttgtctgcaagttggcaatcagcagcgtccaaattacctaccaatggaggtctgcaaaatagtggaaggacagaggtactccaagagactgaaccagaatcagataagggctcttttagaggagacatgtcagcgcccacacgatagggagcgtgacataattcagatggtgaatcacaactcctaccatgaagatccttatgcaaaggagtttggcattaagatcagcgagcgtctggccttggttgaggcacggattttacctgcccctcggctcaagtataatgagactggcagagagaaggattgcttgcctagagttggtcagtggaatatgatgaacaagaaaatggtaaatggtggtagagtcaggagctggatatgtgtcaattttgctcgaaatgtgcaagagagtgttgctagtggattttgtcgtgaactggcccgcatgtgccaggcctcaggaatggactttgctttggagcctgttcttccatctatgtatgcacgtcctgatcaagtggaacgagctctgaaagccaggttccatgatgcaatgaacatacttgggccacagcacaaggagctcgatttacttatcggactgcttcctgataacaatggttctctttatggtgatttgaagcgtatatgcgaaattgaccttggattggtttcccagtgctgttgcacaaagcaagtgtttaaaatgaacaaacaaatcctagcaaatcttgctctgaagataaatgtgaaggttgggggaaggaacactgtactggttgatgcagtgtcgagacgcattccgttggtaactgacaggcctactattatattcggtgctgatgtcacccatcctcaccctggcgaagatagcagcccatccattgctgctgttgtggcctcccaagattggcctgaagtgacaaagtatgctggtttagtttctgctcaatctcacagacaagagttaatagatgatctgtataacatcacgcatgatcctcatagagggcccatctgcggtggaatggtcagggaacttcttatatccttcaaaagatcaactggtcaaaagcctcaacggataatattctatagggatggtgttagtgaagggcaattttaccaggttctattgcatgagcttgatgcaatccgaaaggcttgtgcatcactcgaagcaaattaccaaccgcaggtgactttcattgtggttcagaagcgccaccacacgagattatttgcacacaaccacaatgatcagaattcagtcgacaggagtgggaacatattgcctggtactgttgttgactccaagatttgccatcctacggagtttgacttcttcttgtgcagccatgctggaatcaagggcacaagccgtcccgctcattaccacgtcctgtgggatgaaaacaacttcacagctgatgcgttgcagaccctcaccaacaacctctgttacacttatgcgaggtgcacacgatccgtatctattgttccaccagcatactatgctcatctggcggcgttcagagcccgtttctacatggagtcagatagctcggacagtggttcaatggcgagtggtcgtggaggaggttcgtctacatcgcgcagcactcgtgctgcaggtggtggagccgtcaggccccttcctgcactcaaggacagcgtcaagaatgtcatgttctactgttagaattctactactgcttcgcttggctactactatcagttagcctttaaattgcctcccatttgattgcacttagttgttcatcatgggaagcctcaaataagaagtatgcaagacttctgaagccacatgctatcatgttgtgtgtttctgggacacaccattctatttcacattatctgtagactctatcccactatttcataaaagctgggcttcccctggctctatttgtactctaattcgtatggacctgtttcatcatttcaaaatggtcaattgtcttgtttgcatttggattttcgaaatggttctttcctggtttctatttccattttttttgctagttaagtgaattggatgtctttgttatgaactttttcttaaataacggttcggttggggt

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