LOCUS       NM_001402726            1278 bp    mRNA    linear   PLN 21-MAR-2022
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX28-like (LOC4340069), mRNA.
ACCESSION   NM_001402726 XM_015787053
VERSION     NM_001402726.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1278)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK102692.1, AK059116.1 and CF333051.1.
            
            On Mar 21, 2022 this sequence version replaced XM_015787053.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK102692.1, AK059116.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-342               AK102692.1         3-344
            343-832             AK059116.1         160-649
            833-1278            CF333051.1         197-642
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..1278
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="homeobox-leucine zipper protein HOX28-like"
                     /db_xref="GeneID:4340069"
     exon            1..612
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    253..255
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="upstream in-frame stop codon"
     CDS             259..1029
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="putative homeodomain leucine zipper protein;
                     OSJNBa0041F13.45; homeobox leucine zipper protein; HD-ZIP
                     protein HOX28; Homeodomain transcription factor HOX28;
                     LOC_Os06g04850"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX28"
                     /protein_id="NP_001389655.1"
                     /db_xref="GeneID:4340069"
                     /translation="

MERQGLDLGLSLGLGLTTAATWPAAGFCLNSGMAEQEVIRRDDVVAATAAEDERFACSPGSPVSSGSGKRGSGSGSGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKRVANAGVPSPAAAIFPGHPQFLCGFRDHAGAASSSYGGASSGLAKAVRAAR"

     misc_feature    424..516
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5VPE5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(535..546,550..552,601..603,619..621,658..660,
                     664..669,676..681,685..693,697..702)
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    535..699
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(538..540,547..549,667..669,676..681,688..690)
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    703..837
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5VPE5.1);
                     Region: Leucine-zipper"
     misc_feature    703..>807
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     cl23880"
                     /db_xref="CDD:451592"
     exon            613..1264
                     /gene="LOC4340069"
                     /gene_synonym="Hox28; OsHox28; OsJ_019259"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aggtcaaagcagcagcctcgatcgcaaactgcaggatcgtcgctggctgggcctcaagaatctccaaagcagatccacccacgcgccaccagctcatcattgtcgaccaatcttcttttcttgatttcaatccatgatcttctcatctatttatacccctcgtcttcttctcctcctctcttcatcgtctccgacgccgacgaactcccactcactagtagcacttacttgtagctattgatctagagcacttaagacatggagaggcaaggcttggatcttggcctgagcctcgggctaggcttgacgacggcggcgacatggccggctgctgggttctgtctgaactccggcatggcggagcaggaagtgatcaggcgtgatgatgtggttgcggcgacggcggcggaggatgagaggttcgcgtgctcacccggcagcccggtgtcgagcggcagcgggaagcgaggcagcggcagcggcagcggcgacgaggtcgacgacgccggctgcgacgtcggcggcggcggcgcgcgcaagaagctgcggttgtccaaggaccaggccgccgtcctcgaggagtgcttcaagacgcaccacaccctcactccgaagcagaaggtggcgctggcgaagagcttgaacctgcggccgcggcaggtggaggtgtggttccagaaccgccgcgcgaggacgaagctgaagcagacggaggtggactgcgagcacctcaagcggtggtgcgaccagctcgccgacgacaaccgccgcctccacaaggagctcgccgagctcagggcgctcaaggccacgcccacaccgcccgccgccgcgccgccattgaccaccctcacaatgtgcctctcctgcaagcgcgtcgccaatgccggcgtgccctcgccggcggcggcgatattccccggccacccccagttcttgtgcggattcagagatcacgccggagcagcgtcgtcgtcgtacggcggcgcatcatctggactcgcgaaggcggtcagggcggcgaggtagatcgatcgatgcgcgcgccgccatgatcgacatgaccaagctagcgatctctagctagaagatgatgacattgagcaagacgcaagagtagaacagagttgaattgatctctcgttttcctgtgtatttttaaggatcaagtgcaaagttaatttagtttttgacaaatgtaggatggatccatgtatgcacatgaaaagttgatgaaataacatgagaagaactaattaattgaaaaaaaaaaaaaaa

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