LOCUS       NM_001402434            2958 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC2-like (LOC4337074), transcript variant 3, mRNA.
ACCESSION   NM_001402434 XM_015780854
VERSION     NM_001402434.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2958)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 2958)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI741430.1, AB101645.1, CB683722.1, AK065819.1 and CI036511.1.
            
            On Mar 14, 2022 this sequence version replaced XM_015780854.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00008650, SAMD00020319
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-166               CI741430.1         8-173
            167-815             AB101645.1         418-1066
            816-1316            CB683722.1         136-636
            1317-1512           AB101645.1         1568-1763
            1513-2568           AK065819.1         1061-2116
            2569-2958           CI036511.1         134-523
FEATURES             Location/Qualifiers
     source          1..2958
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..2958
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="homeobox-leucine zipper protein ROC2-like"
                     /db_xref="GeneID:4337074"
     exon            1..92
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..2360
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="isoform 2 is encoded by transcript variant 3;
                     GLABRA 2-like homeobox protein 2; HD-ZIP protein ROC2;
                     Homeodomain transcription factor ROC2; LOC_Os04g53540;
                     OSJNBb0060E08.16; Protein RICE OUTERMOST CELL-SPECIFIC 2;
                     GL2-type homeodomain protein; homeobox-leucine zipper
                     protein ROC2"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC2 isoform 2"
                     /protein_id="NP_001389363.1"
                     /db_xref="GeneID:4337074"
                     /translation="

MERREIFQVADLAHILRGKPVDHLQQPNLLDNHQFQQAFQHQQQQHHLLDQIPATTAESGDNMIRSRASDPLGGDEFESKSGSENVDGVSVDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSQLRSDNEKLRAENMRYKEALSSASCPNCGGPAALGEMSFDEHHLRIENARLREEIDRISAIAAKYVGKPMVPFPVLSNPMAAAASRAPLDLPVAPYGVPGDMFGGGGAGELLRGVQSEVDKPMIVELAVAAMEELVRMAQLDEPLWSVAPPLDATAAAMETLSEEEYARMFPRGLGPKQYGLRSEASRDSAVVIMTHANLVEILMDANQYAAVFSNIVSRAITLEVLSTGVAGNYNGALQVMSVEFQVPSPLVPTRESYFVRYCKQNADGTWAVVDVSLDSLRPSPVLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCERLASVMASNIPTSDIGVITSSEGRKSMLKLAERMVVSFCGGVTASVAHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPKRVFDFLRDESSRSEWDILSNGGIVQEMAHIANGRDQGNCVSLLRVNSSNSNQSNMLILQESCTDASGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPAHDGGDGDGGVGVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVSGESNPQ"

     misc_feature    order(315..329,336..338,387..389,405..407,444..446,
                     450..455,462..467,471..479,483..488)
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(321..323,333..335,453..455,462..467,474..476)
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    324..485
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    873..1562
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(957..962,1008..1010,1071..1073,1077..1079,
                     1110..1112,1122..1124,1134..1136,1143..1148,1161..1166,
                     1245..1247,1251..1262,1269..1271,1278..1280,1284..1286,
                     1290..1292,1338..1340,1380..1382,1386..1397,1401..1403,
                     1437..1439,1443..1445,1449..1451,1455..1457,1461..1463,
                     1467..1469,1485..1487,1491..1499,1503..1511,1518..1523,
                     1530..1532)
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     exon            93..367
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            368..485
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            486..674
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            675..1133
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1134..1235
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1436
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1437..1611
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1612..1883
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1884..1979
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1980..2406
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2407..2953
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agatagataggactatggagaggagggagattttccaagttgctgatcttgcacacatattgagagggaaacctgtagatcatcttcaacagccaaacttgctggataatcaccagttccagcaagcgttccagcatcagcagcagcagcatcatctccttgaccagatcccggcgacgacggcggagagcggcgacaacatgatccgcagccgtgcgtccgaccctctcggcggcgacgagttcgagagcaagtccggcagcgagaacgtcgacggcgtctccgtcgacgaccaggaccccaaccagcggccgcgcaagaagcgctaccaccgccacacccagcatcagatccaggagatggaagcattcttcaaggaatgtccacacccagatgataagcagcgcaaggagctgagccgggagctcggcctggagcctctccaagtgaagttctggttccagaacaagcgcacccaaatgaagaaccagcatgagaggcacgagaactcgcagctgcggtcggataacgagaagctccgggccgagaacatgcggtacaaggaggccctgagcagcgcctcctgccccaactgcggcggccccgccgccctcggcgagatgtccttcgacgagcaccacctccgcatcgagaacgcccgcctccgcgaagagatcgataggatatcggcgatcgcggcgaagtacgtggggaagccaatggtgccgttcccggtgctgtcgaacccgatggcggcggcggcgtcgcgggcgccgctggacctccccgtggcgccgtacggcgtgccgggcgacatgttcggcggcggtggcgccggggagctgctgcgcggggtgcagtcggaggtcgacaagccgatgatcgtggagctcgccgtggcggcgatggaggagctggtccgcatggcgcagctggacgagccgctctggagcgtcgcgccgccgctcgacgccacggcggcggcgatggagacgctcagcgaggaggagtacgcgcgcatgttcccccgagggctcggccccaagcagtacgggctcaggtcggaggcgtcccgcgacagcgccgtcgtcatcatgacgcacgccaacctcgtcgagatcctcatggacgcgaatcagtacgcggcagtgttctcgaacatcgtgtcgagggccatcacgctggaggtgctgtccaccggcgtcgcggggaactacaacggtgcattgcaagtgatgtcagtggagtttcaggtgccatcgccactggtgccaacgagagagagctacttcgtgagatactgcaagcagaacgcagacgggacatgggccgtcgtcgacgtctcgctggacagcctccgccctagccccgtcctcaaatgtcgccgccgtccgtcaggctgcctcatccaagaaatgcccaatggctactccaaggtgacgtgggtggagcatgtggaggtggacgacaggtcggtgcacaacatctacaagctgctggtgaactccgggctggcgttcggcgcgcggcggtgggtcggcacgctggaccgccagtgcgagcgcctcgccagcgtcatggccagcaacatccccaccagcgacatcggcgtgattacgagctcggaggggaggaagagcatgctgaagctggcggagaggatggtggtgagcttctgcggcggcgtgacggcgtcggtggcgcatcagtggacgacgctgtccggcagcggcgccgaggacgtccgcgtcatgacgaggaagagcgtcgacgaccccgggaggccccccggcatcgtcctcaacgccgccacctccttctggctccccgtccctcccaagcgcgtcttcgacttcctccgcgacgaatcctctcgcagtgagtgggacatcctctccaatggcggtatcgttcaagaaatggcccacatcgccaatggccgggatcagggcaactgcgtctcacttcttcgcgtcaacagctcgaactcgaaccagagcaacatgctgatcctgcaggagagctgcacggacgcgtcggggtcgtacgtcatctacgcgccggtggacgtggttgcgatgaacgtcgtgctaaacggcggcgacccggactacgtcgcgctgctgccatcgggcttcgccatcctgcccgatgggccggcgcacgacggtggcgacggcgacggcggcgtcggcgtcggctccggcgggtcgctgctgacggtggcgttccagatactggtggactccgtcccgacggcgaagctctcgctggggtcggtggcgacggtgaacagcctcatcgcctgcacggtggagcgcatcaaggcggccgtctccggcgagagcaatccgcagtagcttcgtccttgaatcaaacaaaagcttcttgtgctttcaatttcaggagcagcaaaattttggagctttcatcagtgggaagtcaagaacgcacctcagactgtccttgccatgtggtgcccatatatagtttggattatttttcgctagtttttccgcaaattcgggaaatttcaaaaaaaatgtgtcaccactacgcaagggcggttggttcgggtattgacttcctcttcatgttcgcctctcggatgctgctaccttatgaatttagggttcttctggagtacaaaaaaaaccccttaatttgatctgtaatttctgttgttcagacttcccagtacctagctagctagtaggagttgcagaatagagatctgtgtccctgtcttatacttttagttctcttcagtgtttgatcagtgctgtttcaatccaaaattgtgtgtgctgtgcttgttattagttcttccttgctgcttcaatgaaggcgatgttaatttcagtttccagcagttgcagagttgtgtaagatgacttgcatttcattgccttcaacagtattctatcagaactgtcgcatatcccccaaaaaaaaaaa

//