LOCUS       NM_001402432            3488 bp    mRNA    linear   PLN 01-MAY-2025
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC2-like (LOC4337074), transcript variant 1, mRNA.
ACCESSION   NM_001402432 XM_015780852
VERSION     NM_001402432.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3488)
  AUTHORS   Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G.,
            Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A.,
            Soderlund,C. and Wang,G.L.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3488)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI308976.1, AB101645.1, CB683722.1, AK065819.1 and CI036511.1.
            
            On Mar 14, 2022 this sequence version replaced XM_015780852.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN07124408, SAMN37494760
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-416               CI308976.1         1-416
            417-1345            AB101645.1         138-1066
            1346-1846           CB683722.1         136-636
            1847-2042           AB101645.1         1568-1763
            2043-3098           AK065819.1         1061-2116
            3099-3488           CI036511.1         134-523
FEATURES             Location/Qualifiers
     source          1..3488
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3488
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="homeobox-leucine zipper protein ROC2-like"
                     /db_xref="GeneID:4337074"
     exon            1..622
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    512..514
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="upstream in-frame stop codon"
     CDS             536..2890
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     GLABRA 2-like homeobox protein 2; HD-ZIP protein ROC2;
                     Homeodomain transcription factor ROC2; LOC_Os04g53540;
                     OSJNBb0060E08.16; Protein RICE OUTERMOST CELL-SPECIFIC 2;
                     GL2-type homeodomain protein; homeobox-leucine zipper
                     protein ROC2"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC2 isoform 1"
                     /protein_id="NP_001389361.1"
                     /db_xref="GeneID:4337074"
                     /translation="

MMIPARHMPSMIGRNGAAYGSSSALSLSQPNLLDNHQFQQAFQHQQQQHHLLDQIPATTAESGDNMIRSRASDPLGGDEFESKSGSENVDGVSVDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSQLRSDNEKLRAENMRYKEALSSASCPNCGGPAALGEMSFDEHHLRIENARLREEIDRISAIAAKYVGKPMVPFPVLSNPMAAAASRAPLDLPVAPYGVPGDMFGGGGAGELLRGVQSEVDKPMIVELAVAAMEELVRMAQLDEPLWSVAPPLDATAAAMETLSEEEYARMFPRGLGPKQYGLRSEASRDSAVVIMTHANLVEILMDANQYAAVFSNIVSRAITLEVLSTGVAGNYNGALQVMSVEFQVPSPLVPTRESYFVRYCKQNADGTWAVVDVSLDSLRPSPVLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCERLASVMASNIPTSDIGVITSSEGRKSMLKLAERMVVSFCGGVTASVAHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPKRVFDFLRDESSRSEWDILSNGGIVQEMAHIANGRDQGNCVSLLRVNSSNSNQSNMLILQESCTDASGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPAHDGGDGDGGVGVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVSGESNPQ"

     misc_feature    713..874
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0J9X2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    848..1018
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    <992..1108
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="Cell division protein ZapB, interacts with FtsZ
                     [Cell cycle control, cell division, chromosome
                     partitioning]; Region: ZapB; COG3074"
                     /db_xref="CDD:442308"
     misc_feature    1403..2092
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1487..1492,1538..1540,1601..1603,1607..1609,
                     1640..1642,1652..1654,1664..1666,1673..1678,1691..1696,
                     1775..1777,1781..1792,1799..1801,1808..1810,1814..1816,
                     1820..1822,1868..1870,1910..1912,1916..1927,1931..1933,
                     1967..1969,1973..1975,1979..1981,1985..1987,1991..1993,
                     1997..1999,2015..2017,2021..2029,2033..2041,2048..2053,
                     2060..2062)
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     exon            623..897
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            898..1015
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1204
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1205..1663
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..1765
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1766..1966
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1967..2141
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2142..2413
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2414..2509
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2510..2936
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2937..3483
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcaataactccttcgcccccctctccacattctcttccacctgtgttccccttttcttctcctcttcttcttcctctcctcctcctgatcctgatcgagaagatctcaccttgatctcttgccgtgtgatctctagctctcgctagccctctgaaccttgcagtttgttgtttgcacccggtgaaacatcttcttttgtgcaggtaggagagacagcaaagcagagataagagttctatatttgcatgtagttcttgtcttggatctcactggctggctgtctcctctctgcagcaaggttcgttgggctagcttgtgtgctagatctgtttctacttgcgtttgcgttgcttggcaagcaagatatatatatatatatctatatctatctatctatcattctatctccctacatatttagagctagcactttgtgtgttctttgggtttgggacacactcatatacgcgtgttcatgagtggaaatggaaggagctgcaagggcaagaattagggtttgagatataggagtataatgatgatcccggcgaggcatatgccgtcgatgatcggccggaacggcgcagcgtacggatcctcatcggcactgtcactcagccagccaaacttgctggataatcaccagttccagcaagcgttccagcatcagcagcagcagcatcatctccttgaccagatcccggcgacgacggcggagagcggcgacaacatgatccgcagccgtgcgtccgaccctctcggcggcgacgagttcgagagcaagtccggcagcgagaacgtcgacggcgtctccgtcgacgaccaggaccccaaccagcggccgcgcaagaagcgctaccaccgccacacccagcatcagatccaggagatggaagcattcttcaaggaatgtccacacccagatgataagcagcgcaaggagctgagccgggagctcggcctggagcctctccaagtgaagttctggttccagaacaagcgcacccaaatgaagaaccagcatgagaggcacgagaactcgcagctgcggtcggataacgagaagctccgggccgagaacatgcggtacaaggaggccctgagcagcgcctcctgccccaactgcggcggccccgccgccctcggcgagatgtccttcgacgagcaccacctccgcatcgagaacgcccgcctccgcgaagagatcgataggatatcggcgatcgcggcgaagtacgtggggaagccaatggtgccgttcccggtgctgtcgaacccgatggcggcggcggcgtcgcgggcgccgctggacctccccgtggcgccgtacggcgtgccgggcgacatgttcggcggcggtggcgccggggagctgctgcgcggggtgcagtcggaggtcgacaagccgatgatcgtggagctcgccgtggcggcgatggaggagctggtccgcatggcgcagctggacgagccgctctggagcgtcgcgccgccgctcgacgccacggcggcggcgatggagacgctcagcgaggaggagtacgcgcgcatgttcccccgagggctcggccccaagcagtacgggctcaggtcggaggcgtcccgcgacagcgccgtcgtcatcatgacgcacgccaacctcgtcgagatcctcatggacgcgaatcagtacgcggcagtgttctcgaacatcgtgtcgagggccatcacgctggaggtgctgtccaccggcgtcgcggggaactacaacggtgcattgcaagtgatgtcagtggagtttcaggtgccatcgccactggtgccaacgagagagagctacttcgtgagatactgcaagcagaacgcagacgggacatgggccgtcgtcgacgtctcgctggacagcctccgccctagccccgtcctcaaatgtcgccgccgtccgtcaggctgcctcatccaagaaatgcccaatggctactccaaggtgacgtgggtggagcatgtggaggtggacgacaggtcggtgcacaacatctacaagctgctggtgaactccgggctggcgttcggcgcgcggcggtgggtcggcacgctggaccgccagtgcgagcgcctcgccagcgtcatggccagcaacatccccaccagcgacatcggcgtgattacgagctcggaggggaggaagagcatgctgaagctggcggagaggatggtggtgagcttctgcggcggcgtgacggcgtcggtggcgcatcagtggacgacgctgtccggcagcggcgccgaggacgtccgcgtcatgacgaggaagagcgtcgacgaccccgggaggccccccggcatcgtcctcaacgccgccacctccttctggctccccgtccctcccaagcgcgtcttcgacttcctccgcgacgaatcctctcgcagtgagtgggacatcctctccaatggcggtatcgttcaagaaatggcccacatcgccaatggccgggatcagggcaactgcgtctcacttcttcgcgtcaacagctcgaactcgaaccagagcaacatgctgatcctgcaggagagctgcacggacgcgtcggggtcgtacgtcatctacgcgccggtggacgtggttgcgatgaacgtcgtgctaaacggcggcgacccggactacgtcgcgctgctgccatcgggcttcgccatcctgcccgatgggccggcgcacgacggtggcgacggcgacggcggcgtcggcgtcggctccggcgggtcgctgctgacggtggcgttccagatactggtggactccgtcccgacggcgaagctctcgctggggtcggtggcgacggtgaacagcctcatcgcctgcacggtggagcgcatcaaggcggccgtctccggcgagagcaatccgcagtagcttcgtccttgaatcaaacaaaagcttcttgtgctttcaatttcaggagcagcaaaattttggagctttcatcagtgggaagtcaagaacgcacctcagactgtccttgccatgtggtgcccatatatagtttggattatttttcgctagtttttccgcaaattcgggaaatttcaaaaaaaatgtgtcaccactacgcaagggcggttggttcgggtattgacttcctcttcatgttcgcctctcggatgctgctaccttatgaatttagggttcttctggagtacaaaaaaaaccccttaatttgatctgtaatttctgttgttcagacttcccagtacctagctagctagtaggagttgcagaatagagatctgtgtccctgtcttatacttttagttctcttcagtgtttgatcagtgctgtttcaatccaaaattgtgtgtgctgtgcttgttattagttcttccttgctgcttcaatgaaggcgatgttaatttcagtttccagcagttgcagagttgtgtaagatgacttgcatttcattgccttcaacagtattctatcagaactgtcgcatatcccccaaaaaaaaaaa

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