LOCUS       NM_001402410            3107 bp    mRNA    linear   PLN 31-DEC-2022
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC4-like (LOC4336705), mRNA.
ACCESSION   NM_001402410
VERSION     NM_001402410.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3107)
  AUTHORS   Wang Z, Tian X, Zhao Q, Liu Z, Li X, Ren Y, Tang J, Fang J, Xu Q
            and Bu Q.
  TITLE     The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular
            Wax Biosynthesis by Promoting the Degradation of Transcription
            Factor ROC4 in Rice
  JOURNAL   Plant Cell 30 (1), 228-244 (2018)
   PUBMED   29237723
  REMARK    GeneRIF: These results suggest a mechanism whereby DHS negatively
            regulates wax biosynthesis by promoting the degradation of
            ROC4.[DHS]
REFERENCE   2  (bases 1 to 3107)
  AUTHORS   Wei J, Choi H, Jin P, Wu Y, Yoon J, Lee YS, Quan T and An G.
  TITLE     GL2-type homeobox gene Roc4 in rice promotes flowering time
            preferentially under long days by repressing Ghd7
  JOURNAL   Plant Sci 252, 133-143 (2016)
   PUBMED   27717449
  REMARK    GeneRIF: Roc4 is an LD-preferential flowering enhancer that
            functions downstream of phytochromes and OsGI, but upstream of
            Ghd7.
REFERENCE   3  (bases 1 to 3107)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI304187.1, AB101647.1, AU092453.1, AK112099.1 and CI389626.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB101647.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN04338665
                                           [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-397               CI304187.1         1-397
            398-1738            AB101647.1         264-1604
            1739-1959           AU092453.1         96-316
            1960-3068           AK112099.1         1942-3050
            3069-3107           CI389626.1         427-465
FEATURES             Location/Qualifiers
     source          1..3107
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3107
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="homeobox-leucine zipper protein ROC4-like"
                     /db_xref="GeneID:4336705"
     exon            1..203
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     CDS             135..2576
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="GL2-type homeodomain protein; HD-ZIP protein ROC4;
                     Homeodomain transcription factor ROC4; LOC_Os04g48070;
                     OSJNBb0032E06.7; Protein RICE OUTERMOST CELL-SPECIFIC 4;
                     GLABRA 2-like homeobox protein 4"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC4"
                     /protein_id="NP_001389339.1"
                     /db_xref="GeneID:4336705"
                     /translation="

MQFPFSGAGPGVFTSSPALSLALADAVAGRNSGGGGKMVTAAHGGVGGGGGGGRAKARDALEVENEMSRSGSDHLDVVSCGDAGGGGGDDDDDEDAEHGNPPKRKKRYHRHTPQQIQELEAMFKECPHPDEKQRAELSKRLGLEPRQVKFWFQNRRTQMKMQLERHENSLLKQENDKLRSENLSIREATSNAVCVGCGGPAMLGEVSLEEHHLRVENARLKDELSRVCALAAKFLGKSISVMAPPQMHQPHPVPGSSLELAVGGIGSMPSATMPISTITDFAGAMSSSMGTVITPMKSEAEPSAMAGIDKSLFLELAMSAMDELVKMAQMGDPLWIPGASVPSSPAKESLNFEEYLNTFPPCIGVKPEGYVSEASRESGIVIIDDGAALVETLMDERRWSDMFSCMIAKASTTEEISTGVAGSRNGALLLVSDEHSVMQAELQVLSPLVPIREVKFLRFSKQLADGVWAVVDVSADELMRDQGITSASSTANMNCRRLPSGCVLQDTPNGFVKVTWVEHTEYDEASVHPLYRPLLRSGLALGAGRWIATLQRQCECLALLMSSIALPENDSSAIHPEGKRSMLKLARRMTDNFCAGVSTSSTREWSKLVGLTGNIGEDVHVMARKSVDEPGTPPGVVLSAATSVWMPVMPERLFNFLHNKGLRAEWDILSNGGPMQEVTSIAKGQQNGNTVCLLKASPTKDKQNSMLILQETCADASGSMVVYAPVDIPAMHLVMSGGDSSCVALLPSGFAILPAGPSIGADHKMGGSLLTVAFQILANSQPSAKLTVESVETVSNLISCTIKKIKTALHCDV"

     misc_feature    318..470
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7Y0V9.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(444..458,465..467,516..518,534..536,573..575,
                     579..584,591..596,600..608,612..614)
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(450..452,462..464,582..584,591..596,603..605)
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    453..614
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    1062..1799
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1146..1151,1194..1196,1257..1259,1263..1265,
                     1299..1301,1311..1313,1323..1325,1332..1337,1350..1355,
                     1455..1457,1461..1472,1479..1481,1488..1490,1494..1496,
                     1500..1502,1548..1550,1617..1619,1623..1634,1638..1640,
                     1674..1676,1680..1682,1686..1688,1692..1694,1698..1700,
                     1704..1706,1722..1724,1728..1736,1740..1748,1755..1760,
                     1767..1769)
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     exon            204..496
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            497..614
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            615..1322
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1445
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1673
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1674..1851
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            1852..2225
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
     exon            2226..3107
                     /gene="LOC4336705"
                     /gene_synonym="GL2-4; Roc4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acgcactgctgctgctgctcgctctcgctttgcttcccctaatcttctcccgggccaggggggaagaggggcggaattcgggcacgagctttggagttggagatcacttcggcgacggcgtggtccccgccggcatgcagttcccgttctccggcgctggcccgggcgtcttcacgtcatcgccggcgctctccctcgcgctggcggacgcggtggcaggccggaacagcggcggcggtgggaagatggttaccgcggcccatggcggcgtcggcggaggaggaggaggaggacgcgcgaaggcgagggacgcgttggaggtggagaacgagatgagccggtccgggagcgaccacctcgacgtcgtctcttgcggcgacgcgggcggcggcggcggcgacgacgacgatgacgaggacgccgagcacggcaacccgcccaagcgcaagaagcggtaccaccgccacacgccgcagcagatccaagagctggaagcgatgttcaaggaatgcccccacccagacgagaagcagcgcgccgagctgagcaagcggctcggcctcgaaccccggcaggtcaagttctggttccagaatcggcgaacgcagatgaagatgcaactggagcgacacgagaactcgctgctgaagcaggagaacgataagctgcggtccgagaacctgtcaatccgggaggccacgagcaacgcggtgtgcgttggctgcggcggcccggcgatgctcggggaggtgtccctggaggagcaccaccttcgcgtcgagaacgcgaggctcaaggacgagctcagccgagtgtgcgcgctcgccgccaagttccttggcaagtccatctctgtcatggcgccaccgcagatgcatcagcctcatcctgtgccaggctcgtcgctggagcttgcggttgggggtatcggttcgatgccatcagccacgatgcccatctcgacgatcactgattttgctggcgccatgtccagttcaatgggcacggtgatcacgcccatgaagtctgaggctgaaccatcggcaatggctggcattgacaagtccttgttcttggagctagcaatgagtgcaatggatgagctagtcaagatggctcagatgggggatccgctatggattccaggtgcctccgtaccttcctcgccggcaaaggagagtctaaacttcgaggagtacctaaacaccttcccaccttgcatcggggtgaagcctgaagggtatgtatcagaggcatctagagaatctggcattgtcatcattgacgatggcgccgcgcttgtggagaccctcatggatgagcgacggtggtccgatatgttctcatgcatgattgccaaggcatcaaccactgaggagatttctactggtgttgctgggagtagaaatggtgcattgcttcttgtgagtgatgaacattctgttatgcaggcagagctacaggtgctttctcctcttgtgcctattagagaggtgaagtttctcaggttctccaaacagctggctgatggtgtatgggctgtagtggacgtttcggctgatgaattgatgagggatcagggcattacttctgcatcctcgactgcaaacatgaactgccgaaggctgccttctggttgtgtgctgcaggacactccaaatgggtttgttaaggtcacatgggttgaacatacagaatatgatgaggcatctgtgcacccgctctaccggcctcttctccggtctggtcttgcccttggtgcagggcgatggatcgcgacattacagcggcagtgcgaatgcttggcccttctcatgtcttctattgcattgccagagaacgactcatcagctatccatcctgaaggtaaacggagcatgttgaagttggcaaggaggatgacggacaacttctgtgcaggggtgagcacatcatctacccgtgaatggagcaaactggttggattgacaggcaacattggggaggatgtgcatgtaatggcgcggaagagtgtggatgaacctggaacgccgccaggtgtggtgcttagtgctgctacatctgtgtggatgcctgtgatgcctgaacggctcttcaacttcttgcacaacaaggggctgcgtgctgaatgggatatcctcagcaatggtggccctatgcaggaggtgacaagcattgccaaggggcaacagaatggcaataccgtatgtctactgaaggctagtcccaccaaagacaagcagaacagcatgctgatcctacaggagacgtgtgcagacgcatccggttcaatggttgtgtatgctcctgtagacatcccagcaatgcaccttgtcatgagtggtggggattcgtcatgcgtcgcccttcttccatcaggttttgccatcctgcctgctgggcctagcatcggcgcagatcacaagatgggcggttcattgctcaccgttgcattccagatacttgccaacagccagcccagtgctaagctcacggtggagtcagtcgagaccgtgagcaaccttatctcctgcaccatcaagaagatcaagacggcgctgcattgcgacgtgtgaacccaacaaggggggacttttggcctagtgggagcggctgtggcgatgagcctgagtcaagaacgaaccgcgacataggaagggacctttgctaggtggcaaggaccggacggggcaggtccttagcacagagcaatggtggtggttcgggtattgactcagcctctcccgcctccgttctctcctgtgactggtgcatgttgaagtgaacctgcattttggacgccatgtagcaggccatctttctttctttttcctttttctttttctttttctttttttagggagaagggagtcatctgtgttttttgttggctggctcagggtgttggtgtttctggtttctagcttttgttacagggagatgtgatacattttgtagaagctccgaattgtcgtgctggtatgtgaggttctgatcataggtctgtgtttgatagtctcgagctatcaacgcctggcaaatgcaaaccttgttatgctaaaatatgttttagatcaatctgattctgaaagctgtttacatgtccc

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