LOCUS       NM_001402407            1703 bp    mRNA    linear   PLN 14-MAR-2022
DEFINITION  Oryza sativa Japonica Group chaperone protein dnaJ A6-like
            (LOC4336584), transcript variant 1, mRNA.
ACCESSION   NM_001402407 XM_015780265
VERSION     NM_001402407.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI569435.1, AK061922.1 and CF276800.1.
            
            On Mar 14, 2022 this sequence version replaced XM_015780265.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK101956.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-208               CI569435.1         2-209
            209-1403            AK061922.1         25-1219
            1404-1703           CF276800.1         1-300               c
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..1703
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="chaperone protein dnaJ A6-like"
                     /db_xref="GeneID:4336584"
     exon            1..91
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            92..271
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    113..115
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="upstream in-frame stop codon"
     CDS             125..1375
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="DnaJ family heat shock protein; LOC_Os04g46390;
                     OSJNBb0034G17.1; dnaJ protein homolog 2"
                     /codon_start=1
                     /product="chaperone protein dnaJ A6"
                     /protein_id="NP_001389336.1"
                     /db_xref="GeneID:4336584"
                     /translation="

MFGRVPRSNNTKYYEVLGVPKTASKDELKKAYRKAAIKNHPDKGGDPEKFKELSQAYEVLTDPEKRDIYDQYGEDALKDGMGGGSDFHNPFDIFEQFFGGGAFGGSSSRVRRQRRGEDVAHTLKVSLEDVYNGSMKKLSLSRNILCPKCKGKGTKSEAPATCYGCHGVGMRNIMRQIGLGMIQHMQTVCPECRGSGEIISDRDKCTNCRASKVIQEKKVLEVHIEKGMQHGQKIVFQGEADEAPDTVTGDIVFILQVKVHPRFKRKYDDLFIERTISLTEALCGFQFILTHLDSRQLLIKANPGEIIKPGQHKAINDEGMPHHGRPFMKGRLFVEFNVEFPESGVLSRDQCRALEMILPPKPGHQLSDMDLDQCEETTMHDVNIEEEMRRKQYQRKQEAYDEDEEEDAPRVQCAQQ"

     misc_feature    560..583
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1);
                     Region: CXXCXGXG motif 1. /evidence=ECO:0000305"
     misc_feature    608..631
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1);
                     Region: CXXCXGXG motif 2. /evidence=ECO:0000305"
     misc_feature    689..712
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1);
                     Region: CXXCXGXG motif 3. /evidence=ECO:0000305"
     misc_feature    1262..1372
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JB88.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            272..437
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            438..576
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            577..710
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            711..853
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            854..1052
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
     exon            1053..1691
                     /gene="LOC4336584"
                     /gene_synonym="DJA6; OsDjA6; OsJ_15688; RNB8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctctctcggtcgcgtggcttgagcggtggtgacaccgctcgcctccgtccgcctcgcctccaccgagaggttctctctgccgccgattcagatttacagggagattatcttgtgatctgtaaacatgtttgggcgtgtaccgaggagtaacaacaccaagtactatgaggttcttggagttcctaaaactgcaagcaaggatgagctaaagaaggcataccggaaggctgccataaaaaaccatcctgacaagggaggggatccagaaaagtttaaagaattatcacaagcgtatgaggttctcactgatcctgagaagagagacatatatgaccaatatggggaggatgctcttaaggatggaatgggaggaggcagtgacttccataatccatttgacatatttgagcagtttttcgggggtggtgcctttggggggagtagctcaagagtacgcagacagagacgtggtgaagatgtggcgcatactttgaaggtgtctttagaagatgtgtataatggatctatgaagaaactatcattatcacgaaatattctgtgcccaaagtgcaaaggaaaagggaccaaatctgaggctccagcaacatgctatggttgtcatggtgtaggaatgaggaatataatgcgacagataggactaggcatgattcaacatatgcagactgtctgtcctgaatgcagaggatcaggtgagatcataagtgacagggataaatgcacaaactgcagagctagcaaagttattcaggagaaaaaggtgcttgaggttcatattgagaagggaatgcaacatggccaaaaaattgtattccaaggtgaagctgatgaagctcctgatacagtgacaggagatatagtatttatcttgcaagttaaggtacatccaagatttaagaggaaatatgatgacctgttcattgagcgcacaatctctttaactgaggcattgtgtgggttccaattcatcctcactcatctggacagtaggcagctcctaatcaaggcaaatcctggcgaaattattaaacctggtcaacacaaggccataaatgatgagggaatgccacaccatggccggcctttcatgaagggccgtctctttgtggaattcaatgttgagttccctgaatctggtgtactctcccgtgaccaatgccgggcacttgagatgatcctaccacctaaacctgggcaccaattatcagatatggacctggatcaatgtgaggaaactaccatgcatgatgtgaacatagaagaggagatgaggcgcaagcagtatcaaaggaagcaggaagcgtacgacgaagatgaggaggaggatgctccaagagtacagtgtgctcaacagtaagaagtgtcactttctggcgcaagtgatgatactccatgtaaactaagtagtttttggtgagactgttcattttagtgtattttgtactagttaaattaaatagtgaatgtctaagttgtgtcgtttgatatataagcttgtgctaacaacataaggctttcttggccttcataagatatactcctacctaggagaaagtggtggatgagcattcgtttctgtttttattggtaatgaacatatttacatgttgtattgactgaaaatggtatgctgaagggtcttcgatgcgtctctgtttgggatgctgagtacaaaaaaaaaaaaa

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