LOCUS       NM_001402404            1237 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein HOX22
            (LOC4336542), mRNA.
ACCESSION   NM_001402404 XM_015778647
VERSION     NM_001402404.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1237)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
REFERENCE   2  (bases 1 to 1237)
  AUTHORS   Cooper B, Clarke JD, Budworth P, Kreps J, Hutchison D, Park S,
            Guimil S, Dunn M, Luginbuhl P, Ellero C, Goff SA and Glazebrook J.
  TITLE     A network of rice genes associated with stress response and seed
            development
  JOURNAL   Proc Natl Acad Sci U S A 100 (8), 4945-4950 (2003)
   PUBMED   12684538
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI636321.1, AK109177.1 and AU057928.1.
            
            On Mar 13, 2022 this sequence version replaced XM_015778647.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK109177.1, AY224440.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-404               CI636321.1         1-404
            405-929             AK109177.1         167-691
            930-1237            AU057928.1         35-342
FEATURES             Location/Qualifiers
     source          1..1237
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..1237
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /note="homeobox-leucine zipper protein HOX22"
                     /db_xref="GeneID:4336542"
     exon            1..493
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..838
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /note="homeodomain leucine zipper protein-like protein;
                     HD-ZIP protein HOX22; Homeodomain transcription factor
                     HOX22; LOC_Os04g45810; OSJNBb0103I08.6"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX22"
                     /protein_id="NP_001389333.1"
                     /db_xref="GeneID:4336542"
                     /translation="

MNGRTQLASWARIAMDRGDHHHLQQQHQFLMPPPAPVVPPQLCMPAMMADEQYMDLGGGGAAAAPGRGGAGERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGNGGAATTAASSSSCNGSGSEEVDDDDDKRNAAAGCLDLEPPESCVLGGATCATPADVSVESDQCDDQLDYDEGLFPESFCATPELWEPWPLVEWNAVA"

     misc_feature    order(224..232,236..238,290..292,308..310,347..349,
                     353..358,365..370,374..382,386..391)
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    224..388
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(224..226,233..235,356..358,365..370,377..379)
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    392..526
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XUJ5.2);
                     Region: Leucine-zipper"
     misc_feature    392..499
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     misc_feature    515..643
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /note="propagated from UniProtKB/Swiss-Prot (Q7XUJ5.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            494..1223
                     /gene="LOC4336542"
                     /gene_synonym="Hox22; OsHox22; OsJ_014981"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gagagggatgaatggtcgaacacagctagctagctgggctaggatcgccatggatcggggtgaccaccaccacctccagcagcagcaccagttcttgatgccaccgcctgcgccggtggtgccgccgcagctgtgcatgccggcgatgatggcggacgagcagtacatggacctgggcggtggcggggcggcggcggcgccggggaggggcggggccggggagaggaagcggcggttcacggaggagcagatacggtcgctggagtccatgttccacgcgcaccacgccaagctggagccccgcgagaaggcggagctggcgcgcgagctgggcctgcagccgcggcaggtggccatctggttccagaacaagcgcgcgcggtggcgctccaagcagctcgagcacgactacgccgcactccgctccaagtacgacgccctccactcccgcgtcgagtccctcaagcaagagaagctcgctctcaccgtccagttgcacgagctaagagagaggctgagggaacgggaggagaggagcggcaacggtggtgccgccacgacggcagcaagcagcagcagctgcaacggatcaggcagcgaggaggtcgacgacgacgacgacaagaggaacgccgccgcggggtgcctggacctcgagccgccggagagctgcgtgctcggcggcgcgacgtgcgccacgccggcggacgtgtcggtggagtcggatcagtgcgacgaccagcttgactacgatgagggcttgttcccggagtccttctgcgccacgccggagctgtgggagccatggccgctcgtcgagtggaatgcggtggcttgaaagacagagagtagtatattaccctaggttaatttgtgtgtacatgtagcttaaagtacgtggatcacgtctcctcgactgatctgccgtctcccttggacagagagggaaaagagggccgtggcaatgacgtgtggggccggtttgtagattggggttgcaagaggaatctcgttggagtagtggtggtggaaaccttggaagcaattaagccaatggactttgtgttttggatggtgctaaaatggagaaaactagatcgagctcattggaagagttgcataggaattcaagcatcttttgtggtcacttcgaattcggatttagtagtaatctattcgaaagatgttcaattgacgatattattaaactagttttatatctaaaaaaaaaaaaaaa

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