LOCUS       NM_001402380            1584 bp    mRNA    linear   PLN 31-DEC-2022
DEFINITION  Oryza sativa Japonica Group 26S proteasome non-ATPase regulatory
            subunit 6-like (LOC4336206), mRNA.
ACCESSION   NM_001402380 XM_015780316
VERSION     NM_001402380.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI585415.1, CB650738.1, CB664296.1 and CI520796.1.
            
            On Mar 11, 2022 this sequence version replaced XM_015780316.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK068887.1, AB037149.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-411               CI585415.1         1-411
            412-774             CB650738.1         371-733
            775-1431            CB664296.1         86-742              c
            1432-1584           CI520796.1         225-377
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..1584
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /note="26S proteasome non-ATPase regulatory subunit
                     6-like"
                     /db_xref="GeneID:4336206"
     exon            1..271
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    13..15
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /note="upstream in-frame stop codon"
     CDS             127..1296
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /note="26S proteasome regulatory particle non-ATPase
                     subunit7; 26S proteasome regulatory particle non-ATPase
                     subunit 7; 26S proteasome regulatory subunit RPN7;
                     LOC_Os04g40850; OSJNBa0081L15.15"
                     /codon_start=1
                     /product="26S proteasome non-ATPase regulatory subunit 6"
                     /protein_id="NP_001389309.1"
                     /db_xref="GeneID:4336206"
                     /translation="

MDGGVGEEGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEGKTVAVGQKMDLVFHTLQIGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSVISLDRVSLKAKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQGDFLLNRIQKLSRVIDL"

     misc_feature    145..1272
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /note="26S proteasome regulatory complex component,
                     contains PCI domain [Posttranslational modification,
                     protein turnover, chaperones]; Region: RPN7; COG5187"
                     /db_xref="CDD:227514"
     exon            272..386
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /inference="alignment:Splign:2.1.0"
     exon            387..477
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /inference="alignment:Splign:2.1.0"
     exon            478..623
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /inference="alignment:Splign:2.1.0"
     exon            624..843
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /inference="alignment:Splign:2.1.0"
     exon            844..952
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1121
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1576
                     /gene="LOC4336206"
                     /gene_synonym="OJ000223_09.5; OsJ_15241; OsRPN7; RPN7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggaggacgaaactagccttctctccttctctctcgtgttctctcccaatctcttcttgcggcggaagcaaagcgagaagcgaggcgactcttctccggcggcggcggcggcggaagcggcggcgagatggacggcggcgtaggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcgcacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtcaaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcaggatcgaggaggagatccggaagcttgacgagaagatcgctgatgctgaagagaatttgggtgagagtgaagtgcgtgaagcccatctagccaaatcgttgtatttcataagggttggagagaaggagaaggcactagaacagcttaaagttactgaaggaaaaactgtagctgttgggcaaaagatggaccttgttttccacactttacagattgggtttttctatatggattttgatctcatctctaagtctattgacaaagccaaaaaattgtttgaggagggtggtgattgggagaggaagaacagattgaaagtgtacgagggcttatactgcatggccactagaaacttcaagaaagctgcaagcttatttttggattcaatttcaacattcacaacctatgagttgttcccctatgatacattcatattctacacagttcttacaagtgttatctcattggatcgtgtatccctaaaggcaaaggttgtagatgcacctgagatcctggctgtaattggcaaagtacctcacctctctgagtttctcaactccctctacaattgccagtacaagtcattttttgccgcattctctggcttgacggagcagatcaagttagaccgttacctgcagcctcatttccgttactacatgcgtgaagtccgtactgttgtctattcacaattcctcgagtcctacaagagtgtgacgatggaagcaatggcttctgcatttggtgtgaccgttgatttcatagacctggaattgtcacgcttcattgctgctggaaagctccactgcaagatcgataaggttgcttgcgtcctggagacgaaccggcctgatgccagaaatgctttctaccaggcaaccatcaagcaaggggacttcctgctgaaccgcatccagaagctatcacgagtcattgacctgtaggtgttagtgttggagctggtgcttgccaaaactctgctcgagctcccccgcacgagtaacttatttgctttggtcccaggggactacgaacagtacttgacttcgcattcgaagtaggttacgaggaaagagagcttaacaaaatcagcgttaaatctgagaatttgagcttatgtaacctactatatggatcgatgaaagttcagacccgttgtttctagactctcttctgtgatgaattcatccatttatttcatatcggtgatcatttgtgtttccaaaaaaaaa

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