LOCUS       NM_001402246            1682 bp    mRNA    linear   PLN 31-DEC-2022
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 6
            (LOC4333973), transcript variant 2, mRNA.
ACCESSION   NM_001402246 XM_015773906
VERSION     NM_001402246.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Tsuda K, Ito Y, Sato Y and Kurata N.
  TITLE     Positive autoregulation of a KNOX gene is essential for shoot
            apical meristem maintenance in rice
  JOURNAL   Plant Cell 23 (12), 4368-4381 (2011)
   PUBMED   22207572
  REMARK    GeneRIF: Positive autoregulation of OSH1 is essential for its
            expression and shoot apical meristem maintenance.
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
REFERENCE   3  (bases 1 to 1682)
  AUTHORS   Matsuoka M, Ichikawa H, Saito A, Tada Y, Fujimura T and
            Kano-Murakami Y.
  TITLE     Expression of a rice homeobox gene causes altered morphology of
            transgenic plants
  JOURNAL   Plant Cell 5 (9), 1039-1048 (1993)
   PUBMED   8104574
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI761904.1 and FJ940206.1.
            
            On Mar 9, 2022 this sequence version replaced XM_015773906.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FJ940206.1, D16507.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMN02716058
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-358               CI761904.1         1-358
            359-1682            FJ940206.1         344-1667
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1682
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="homeobox protein knotted-1-like 6"
                     /db_xref="GeneID:4333973"
     exon            1..547
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    158..160
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="upstream in-frame stop codon"
     CDS             170..1255
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="KNOX class 1 homeodomain protein; Homeobox protein
                     OSH1; Homeobox protein knotted-1-like 1; LOC_Os03g51690;
                     OSJNBa0013A09.5"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 6"
                     /protein_id="NP_001389175.1"
                     /db_xref="GeneID:4333973"
                     /translation="

MEEISHHFGVVGASGVHGGHQHQHHHHPWGSSLSAIVAPPPPPQLQQQQTQAGGMAHTPLTLNTAAAAVGNPVLQLANGSLLDACGKAKEASASASYAADVEAIKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAATEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLSISGRSLRNILSSGSSEEDQEGSGGETELPEIDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDEMQFVMMDGYHPTNAAAFYMDGHFINDGGLYRLG"

     misc_feature    200..313
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="propagated from UniProtKB/Swiss-Prot (P46609.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    476..595
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    650..778
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    893..958
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    1016..1132
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            548..670
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     exon            671..815
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     exon            816..1048
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1664
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggttcttcctttttcctctttctcttcgtccaagaacttcacctcaatagctcgagctacggcctaacttttgcgttgcgcaggagagctcgatcgctgcaccaatacttcactggagatcgcctagctgcagctagctagcttatcctgcgtgtcttgagcttctctcatggaggagatctcccaccacttcggggtcgtcggagccagcggcgtccatggcggccaccagcatcagcatcaccaccacccgtggggttcttccctgagcgccatcgtcgcgccgccgccgccgccgcagctgcagcagcagcagacgcaggccggcggcatggcgcacacgccgctcacgctgaacacggcggcggcggcggtcggcaacccggtgctgcagctggcgaacggcagcctgctcgacgcgtgcggcaaggcgaaggaggcgtcggcgtcggcgtcgtacgccgccgacgtggaggccatcaaggccaagatcatctcccacccccactactcctccctcctcgccgcctacctcgactgccagaaggttggggcgccgccggaggtggcggcgaggctgacggcggtggcgcaggacctggagcttcgccagcgcacggcgctcggcgtcctcggcgccgccacggagccggagctggaccagttcatggaggcgtaccacgagatgctggtgaagtacagggaggagctgacgaggccgctgcaggaggccatggagttcttgaggagggtggagacgcagctcaacacgctctccatctccggcagatcgcttcgcaatatcctttcctccggctcttctgaggaggaccaagaaggtagcggaggagagacagagctacctgagattgatgcacatggtgtggatcaggagctcaagcaccatttgctgaagaagtacagtggatacctgagctccctgaagcaagaactgtcaaagaagaagaaaaaagggaagctccccaaggatgctcgtcaacagctcctcaactggtgggagctgcactacaaatggccttacccctcggagagtcagaaggtggcactggcggagtcgacggggctggacctgaagcagatcaacaactggttcatcaaccagaggaagcggcactggaagccctccgacgagatgcagttcgtgatgatggacggctaccacccgaccaacgccgccgccttctacatggacggccacttcatcaacgacggcggcctctacaggctcggctagctagctagcctactccttatccccagctaccatgacctagatcgatctcgaccccaaatcaatggtcgctaagctactgaaaagtttgtgatgagaattgaagaacctaggttagtcttcctggtaatttgatgctcgcgcgtacgcacgccatggatggctgcgtgcttattttgtttcttgccgcaatatgtaatgcaattgccttagctaatgcatcaactcgggtcggttttagctgctgctgctgcgccacaatgaggtggttgtggttatgcttttgtgtggtttaatacgccaagacgtacacattgcttcgaaatgtcgctactcttgctgctgctaattaagtgcgtgtttgaataattcggatctatatactacctggttaattcctatcttctgattaaaaaaaaaaaaaaaaaaa

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