LOCUS       NM_001402245            1617 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 6
            (LOC4333973), transcript variant 1, mRNA.
ACCESSION   NM_001402245
VERSION     NM_001402245.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Tsuda K, Ito Y, Sato Y and Kurata N.
  TITLE     Positive autoregulation of a KNOX gene is essential for shoot
            apical meristem maintenance in rice
  JOURNAL   Plant Cell 23 (12), 4368-4381 (2011)
   PUBMED   22207572
  REMARK    GeneRIF: Positive autoregulation of OSH1 is essential for its
            expression and shoot apical meristem maintenance.
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
REFERENCE   3  (bases 1 to 1617)
  AUTHORS   Matsuoka M, Ichikawa H, Saito A, Tada Y, Fujimura T and
            Kano-Murakami Y.
  TITLE     Expression of a rice homeobox gene causes altered morphology of
            transgenic plants
  JOURNAL   Plant Cell 5 (9), 1039-1048 (1993)
   PUBMED   8104574
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK107637.1 and FJ940206.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00008650,
                              SAMN02716061 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               AK107637.1         1-168
            169-1617            FJ940206.1         219-1667
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1617
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="homeobox protein knotted-1-like 6"
                     /db_xref="GeneID:4333973"
     exon            1..18
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     exon            19..482
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    93..95
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="upstream in-frame stop codon"
     CDS             105..1190
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="KNOX class 1 homeodomain protein; Homeobox protein
                     OSH1; Homeobox protein knotted-1-like 1; LOC_Os03g51690;
                     OSJNBa0013A09.5"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 6"
                     /protein_id="NP_001389174.1"
                     /db_xref="GeneID:4333973"
                     /translation="

MEEISHHFGVVGASGVHGGHQHQHHHHPWGSSLSAIVAPPPPPQLQQQQTQAGGMAHTPLTLNTAAAAVGNPVLQLANGSLLDACGKAKEASASASYAADVEAIKAKIISHPHYSSLLAAYLDCQKVGAPPEVAARLTAVAQDLELRQRTALGVLGAATEPELDQFMEAYHEMLVKYREELTRPLQEAMEFLRRVETQLNTLSISGRSLRNILSSGSSEEDQEGSGGETELPEIDAHGVDQELKHHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQQLLNWWELHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSDEMQFVMMDGYHPTNAAAFYMDGHFINDGGLYRLG"

     misc_feature    135..248
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="propagated from UniProtKB/Swiss-Prot (P46609.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    411..530
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    585..713
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    828..893
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    951..1067
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            483..605
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     exon            606..750
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     exon            751..983
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1599
                     /gene="LOC4333973"
                     /gene_synonym="OSH1; Oskn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agctcagctcagctcaaggagagctcgatcgctgcaccaatacttcactggagatcgcctagctgcagctagctagcttatcctgcgtgtcttgagcttctctcatggaggagatctcccaccacttcggggtcgtcggagccagcggcgtccatggcggccaccagcatcagcatcaccaccacccgtggggttcttccctgagcgccatcgtcgcgccgccgccgccgccgcagctgcagcagcagcagacgcaggccggcggcatggcgcacacgccgctcacgctgaacacggcggcggcggcggtcggcaacccggtgctgcagctggcgaacggcagcctgctcgacgcgtgcggcaaggcgaaggaggcgtcggcgtcggcgtcgtacgccgccgacgtggaggccatcaaggccaagatcatctcccacccccactactcctccctcctcgccgcctacctcgactgccagaaggttggggcgccgccggaggtggcggcgaggctgacggcggtggcgcaggacctggagcttcgccagcgcacggcgctcggcgtcctcggcgccgccacggagccggagctggaccagttcatggaggcgtaccacgagatgctggtgaagtacagggaggagctgacgaggccgctgcaggaggccatggagttcttgaggagggtggagacgcagctcaacacgctctccatctccggcagatcgcttcgcaatatcctttcctccggctcttctgaggaggaccaagaaggtagcggaggagagacagagctacctgagattgatgcacatggtgtggatcaggagctcaagcaccatttgctgaagaagtacagtggatacctgagctccctgaagcaagaactgtcaaagaagaagaaaaaagggaagctccccaaggatgctcgtcaacagctcctcaactggtgggagctgcactacaaatggccttacccctcggagagtcagaaggtggcactggcggagtcgacggggctggacctgaagcagatcaacaactggttcatcaaccagaggaagcggcactggaagccctccgacgagatgcagttcgtgatgatggacggctaccacccgaccaacgccgccgccttctacatggacggccacttcatcaacgacggcggcctctacaggctcggctagctagctagcctactccttatccccagctaccatgacctagatcgatctcgaccccaaatcaatggtcgctaagctactgaaaagtttgtgatgagaattgaagaacctaggttagtcttcctggtaatttgatgctcgcgcgtacgcacgccatggatggctgcgtgcttattttgtttcttgccgcaatatgtaatgcaattgccttagctaatgcatcaactcgggtcggttttagctgctgctgctgcgccacaatgaggtggttgtggttatgcttttgtgtggtttaatacgccaagacgtacacattgcttcgaaatgtcgctactcttgctgctgctaattaagtgcgtgtttgaataattcggatctatatactacctggttaattcctatcttctgattaaaaaaaaaaaaaaaaaaa

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