LOCUS       NM_001402190            3136 bp    mRNA    linear   PLN 07-FEB-2025
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX32-like (LOC4333544), mRNA.
ACCESSION   NM_001402190 XM_015776998
VERSION     NM_001402190.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI618156.1, CI613580.1, AK103284.1 and CI119658.1.
            
            On Mar 8, 2022 this sequence version replaced XM_015776998.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK103284.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN09515984,
                                           SAMN09515987 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               CI618156.1         2-165
            165-487             CI613580.1         111-433
            488-2959            AK103284.1         489-2960
            2960-3136           CI119658.1         374-550
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..3136
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="homeobox-leucine zipper protein HOX32-like"
                     /db_xref="GeneID:4333544"
     exon            1..598
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    204..206
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="upstream in-frame stop codon"
     CDS             345..2924
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="homeodomain leucine zipper protein 32; B1394A07.10;
                     HD-ZIP protein HOX32; Homeodomain transcription factor
                     HOX32; LOC_Os03g43930"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX32"
                     /protein_id="NP_001389119.1"
                     /db_xref="GeneID:4333544"
                     /translation="

MAAAMVAAVHGVGRQDRSSPGGGGAPQVDTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYENGYMRQQLHNPSVATTDTSCESVVTSGQHHQQQNPAATRPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCVDVLHVIPTGNGGTIELIYMQTYAPTTLAAPRDFWILRYTSGLEDGSLVICERSLTQSTGGPSGPNTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEMPYGGGRQPAVLRTFSQRLSRGFNDAVNGFPDDGWSLMSSDGAEDVTIAFNSSPNKLVGSHVNSSQLFSAIGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAAALRASPYAVPGLRAGGFMGSQVILPLAHTLEHEEFLEVIRLEGHSLCHDEVVLSRDMYLLQLCSGVDENAAGACAQLVFAPIDESFADDAPLLPSGFRVIPLDGKTDAPSATRTLDLASTLEVGSGGTTRASSDTSSTCNTRSVLTIAFQFSYENHLRESVAAMARQYVRTVVASVQRVAMAIAPSRLGGQIETKNPPGSPEAHTLARWIGRSYRFHTGADLLRTDSQSTDSSLKAMWQHSDSIMCCSLKAAPVFTFANQAGLDMLETTLIALQDISLEKILDDDGRKALCTEFPKIMQQGFAYLPGGVCVSSMGRPVSYEQAVAWKVLSDDDTPHCLAFMFVNWSFV"

     misc_feature    363..437
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6AST1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    438..614
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    <594..713
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cd14686"
                     /db_xref="CDD:269834"
     misc_feature    order(612..614,621..626,633..638,642..647,654..659,
                     663..668,675..680,684..689,696..701,705..710)
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269834"
     misc_feature    780..860
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6AST1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    867..1517
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(951..956,978..980,1023..1025,1029..1031,1062..1064,
                     1074..1076,1086..1088,1095..1100,1101..1106,1173..1175,
                     1179..1190,1197..1199,1206..1208,1212..1214,1218..1220,
                     1266..1268,1329..1331,1335..1346,1350..1352,1386..1388,
                     1392..1394,1398..1400,1404..1406,1410..1412,1416..1418,
                     1440..1442,1446..1454,1458..1466,1473..1478,1485..1487)
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     misc_feature    2487..2918
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /note="MEKHLA domain; Region: MEKHLA; pfam08670"
                     /db_xref="CDD:462555"
     exon            599..758
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            759..874
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            875..965
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1061
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1175
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1259
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            1260..1415
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1490
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            1491..1597
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            1598..1790
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            1791..1979
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            1980..2060
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            2061..2195
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            2196..2521
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            2522..2627
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            2628..2777
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
     exon            2778..3136
                     /gene="LOC4333544"
                     /gene_synonym="hox32; OsHox32"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcttcccctgtccaccactattaaaccaacccccaccccttctctctcctcctctaccgtccttcccttcttctctctcgctacctttcccttcccacctcctcctcctcctcctcaccaccaccacgcgcctccgctcgcaagaagcacctccgaccgccatggcgcgcgcgggagctggcggcagtctctccctggaggcatgacgcggcggcgcccgtggccgtggctcctgttgctactactgcgaccaactactgcgctcggtcggcggtggtggtggccctggtcgtcgtcgtagcgcgtcggcggaggcgggagaagaaggagaagggtcgacggggatggcggcggcgatggtggcggcggtgcatggagtggggaggcaggacaggtcgtcgcctggcggcggaggggcgccgcaagtggacacgggcaagtacgtgcgctacaccccggagcaggtggaggcgctggagcgggtctacggcgagtgccccaagcccagctcgctccgccgccagcagctcatccgcgagtgccccatactcagcaacatcgagcccaagcagatcaaggtctggttccagaaccgcaggtgccgcgagaagcagcgcaaggaggcatctcgcctgcaaactgtgaaccggaagttgactgcgatgaacaagctgttgatggaggagaatgacaggctgcagaagcaggtgtcccgcctcgtttacgagaacgggtacatgcggcagcagctccataatccttctgtggcaactacagacacgagctgtgagtctgtggttacaagtggtcaacaccaccaacagcaaaacccagcagccacgcgtccgcaaagggacgcgaacaacccagctggtctactcgctatagctgaggagaccttggcagagttcctgtcgaaagcgacgggtactgctgtcgattgggtgcaaatggttgggatgaagcctggtccggattccattggaatcatcgctgtttcgcacaattgtagtggcgtagcagcacgagcttgcggccttgtgagccttgagcccacaaaggttgctgagatccttaaggatcgcccatcttggtatcgcgattgccggtgtgtggatgtgctccatgttatccctacgggtaatggtggaactattgagcttatctacatgcagacttatgcaccgacaactttggcggcaccacgtgacttctggatactccgttacactagtggtcttgaggatggaagtcttgtgatctgtgagagatcattgactcaatccactggtggcccatcaggacctaacactccaaactttgtcagagccgaggtgcttcctagcggctatttgatccgcccatgtgaggggggtggttccatgattcacattgtggatcatgttgatttggatgcttggagtgtgcctgaggtccttagaccactttatgaatctcctaagatccttgcgcagaagatgacaattgctgcactgcgtcacattaggcaaattgcacatgaatcaagtggggaaatgccctatggagggggccgtcagccagcagttctgagaacatttagtcagaggctaagcagaggcttcaatgatgctgtcaatggattcccggatgatggctggtcactgatgagcagcgatggtgctgaggatgtgacaattgcttttaactcatctccaaacaagcttgttggatctcatgtcaactcctcccagctgttttctgcaattggaggcggcatcttgtgtgcaaaggcatctatgctgttacagaatgtaccacctgctctcctagtgcgatttttgagggagcaccgctctgaatgggctgatcctggtgttgatgcttattctgctgctgcgttgagggctagtccatatgcagttcctggtctgcgagctggtggttttatgggcagtcaggttatattgccacttgcgcacaccttagagcatgaagagttcctggaggtcattaggcttgagggacacagcctctgccatgatgaggtcgttctatcaagagatatgtaccttctgcagctgtgcagcggtgtagatgaaaatgctgcgggtgcatgtgcccagcttgtctttgcacccattgacgaatcttttgctgatgatgcaccactgctaccctcaggcttccgtgtgataccactggatggcaagacggatgcaccatctgcgacacgcacacttgacctggcatctactcttgaggttggatcgggtgggactacacgggcttctagtgacacctcgagcacctgcaacacaagatcggtcctgaccatagctttccaattctcatatgaaaaccaccttcgtgaaagcgtagcggcaatggccaggcagtatgtccggaccgtggtggcatcagtgcagagagtggccatggcaatagctccttcacgtcttggtggacagattgaaacaaagaaccctccaggatctcctgaggcccatacgcttgcaaggtggattgggaggagctaccgattccacactggagcggatctccttcgcacagactcacaaagcacggattcttccttgaaagcaatgtggcaacactctgattcaatcatgtgctgctccctgaaggctgctcctgtgttcaccttcgccaaccaagccggcctcgacatgctggagacgacgctgattgctctccaggacatctcgctcgagaagatccttgatgatgatggccggaaggcactatgtacagagttccccaagatcatgcagcagggtttcgcctacctcccgggcggcgtgtgcgtgtcgagcatggggcggccggtgtcgtacgagcaggcggtggcgtggaaggtcctgagcgacgacgacacgccgcactgcctcgccttcatgttcgtcaactggtcattcgtctgagaaccaccctagtagaatcgatcccccctcttgtttgtctgtcctaaagaccttatgtagtattgcttttgtgtatcatcaccatgaacatgtcaagaacctccccagtttctatcatcatgaacttccgtttgaatctagtactgctaaatgatctatatggtatctttatctgtgagtgatttttgcgtgtgaagtttgtcacggaagga

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