LOCUS       NM_001401995            1634 bp    mRNA    linear   PLN 01-JAN-2023
DEFINITION  Oryza sativa Japonica Group 26S proteasome regulatory subunit 6A
            homolog (LOC4331050), mRNA.
ACCESSION   NM_001401995 XM_015769665
VERSION     NM_001401995.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E,
            Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang
            GL.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF310207.1, CB679656.1, CB679657.1 and CI332290.1.
            
            On Mar 3, 2022 this sequence version replaced XM_015769665.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB037155.1, AK062185.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03003383 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-501               CF310207.1         2-502
            502-855             CB679656.1         451-804
            856-1446            CB679657.1         59-649              c
            1447-1634           CI332290.1         282-469
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..1634
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /note="26S proteasome regulatory subunit 6A homolog"
                     /db_xref="GeneID:4331050"
     exon            1..207
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     CDS             73..1362
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /note="P0689B12.30-2; putative 26S proteasome regulatory
                     particle triple-A ATPase subunit5a; rice homologue of Tat
                     binding protein; LOC_Os02g56000; Tat-binding protein
                     homolog 1; 26S protease regulatory subunit 6A homolog"
                     /codon_start=1
                     /product="26S proteasome regulatory subunit 6A homolog"
                     /protein_id="NP_001388924.1"
                     /db_xref="GeneID:4331050"
                     /translation="

MSSPPPAAAAAMAVDDADDDQLASMSTEDIVRATRLLDNETRVLKDELQRTNLEVESYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVIGLVDPEKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKDRFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA"

     misc_feature    73..135
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /note="propagated from UniProtKB/Swiss-Prot (P46465.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    172..1341
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /note="ATP-dependent 26S proteasome regulatory subunit
                     [Posttranslational modification, protein turnover,
                     chaperones]; Region: RPT1; COG1222"
                     /db_xref="CDD:224143"
     exon            208..324
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            325..432
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            433..624
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            625..816
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            817..935
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1023
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1143
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1144..1284
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..1634
                     /gene="LOC4331050"
                     /gene_synonym="OsRPT5a; TBP-1; TBP1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aactacagtaaactgaccaacgcaaaccgcatcgatcaactccttccccaagtcgaagcaaaatccctagcgatgtcgtcgccgccgcccgccgccgccgccgcgatggccgtcgacgacgccgacgacgaccagctcgcctccatgtccacggaggacatcgtcagggcaacccgcctcctcgacaacgagacccgcgtcctcaaggatgagctgcagcggacgaaccttgaggtggaatcctacaaggagaagatcaaggagaaccaggagaagatcaaactcaacaagcagctgccttaccttgtcggcaacatcgtcgagatattggaaatgaaccccgaggatgaggctgaagaggatggtgcgaacatcgatctggattcacaaaggaaaggaaaatgcgttgttttgaagacatccacaagacaaacaatattccttcctgtaatcgggcttgttgaccctgaaaagctcaagcctggggatttggttggagtcaacaaagacagctacttgatactagacacgctaccttcagaatatgattcacgggttaaggcaatggaggtagatgaaaagcctacagaggattacaatgacattggtggccttgagaaacagattcaagagcttgttgaagcaatagtattgcccatgactcacaaggaccggtttcagaagttgggaattcgccccccgaaaggtgttcttttgtacggaccacctggcactggaaagaccctaatggctcgtgcatgtgctgcccaaactaacgccacatttctgaaacttgctggtccacagcttgtccagatgttcatcggtgatggtgcaaagcttgtccgtgatgcctttcagcttgcaaaggagaaatccccctgcatcatttttattgatgaaattgacgcaattggaacaaagcgttttgatagtgaagttagtggtgacagagaagtgcagcgcacaatgttggagttgctgaatcagctagatggattcagtagtgacgagaggataaaggtgatagctgcaactaatcgcgcggacattcttgatcctgctttgatgaggtctggtaggctggaccgaaaaattgagttccctcatccatccgaagaagcacgagctagaattttgcaaatccattcaagaaaaatgaatgtaaaccctgatgtcaactttgaagagttggcacgatctacggacgacttcaatggtgcacaactgaaggccgtttgtgtagaagcaggcatgcttgccctacgccgagatgctacagaggtgacacacgaggatttcaatgaagggatcatacaagtgcaagccaaaaagaagtccagtttaaattattacgcttaattcttccgagagagttattaggcctaaggaaacgctccgtccaaaattgtttgtttgtaacactaccgttttatatatttgtgtggttcaagatgtgattgtacgaaacatgtcttgcgctgttccttctctgcttgatatatactgatagaagttgactcgtcccttgcgtaattgcgttcacgtgtgtttggcttcttgcgtgtcaaaactggcaattcgaatactggacgatttaggattactcggctggcattgatgcttccttggat

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