LOCUS       NM_001401910            1357 bp    mRNA    linear   PLN 01-MAR-2022
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX24-like (LOC4330155), mRNA.
ACCESSION   NM_001401910 XM_015768652
VERSION     NM_001401910.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Bhattacharjee A, Srivastava PL, Nath O and Jain M.
  TITLE     Genome-wide discovery of OsHOX24-binding sites and regulation of
            desiccation stress response in rice
  JOURNAL   Plant Mol Biol 105 (1-2), 205-214 (2021)
   PUBMED   33025523
  REMARK    GeneRIF: Genome-wide discovery of OsHOX24-binding sites and
            regulation of desiccation stress response in rice.
REFERENCE   2  (bases 1 to 1357)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK287604.1, EU847515.1 and CI219838.1.
            
            On Mar 1, 2022 this sequence version replaced XM_015768652.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU847515.1, AK287604.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-808               AK287604.1         1-808
            809-1242            EU847515.1         801-1234
            1243-1357           CI219838.1         360-474
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..1357
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="homeobox-leucine zipper protein HOX24-like"
                     /db_xref="GeneID:4330155"
     exon            1..559
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    53..55
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="upstream in-frame stop codon"
     CDS             101..886
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="P0048B08.20; putative homeodomain leucine zipper
                     protein; homeobox leucine zipper protein; HD-ZIP protein
                     HOX24; Homeodomain transcription factor HOX24;
                     LOC_Os02g43330"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX24"
                     /protein_id="NP_001388839.1"
                     /db_xref="GeneID:4330155"
                     /translation="

MESDCQFLVAPPQPHMYYDTAAAAVDEAQFLRQMVAAADHHAAAAGRGGGDGDGGGGGGGGGERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQDQSGSCDGGGAEGDDDDKRNSVMNASSSGLVEEDYVSCLAVPVVDVSEDGSAACGGSSYEYDHHLDYLGGGQLPDPFCGMPDLWEIWPMVEWNAVA"

     misc_feature    224..301
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6H6S3.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(290..298,302..304,356..358,374..376,413..415,
                     419..424,431..436,440..448,452..457)
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    290..454
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(290..292,299..301,422..424,431..436,443..445)
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    458..592
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6H6S3.1);
                     Region: Leucine-zipper"
     misc_feature    458..583
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:426641"
     misc_feature    578..664
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6H6S3.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            560..1334
                     /gene="LOC4330155"
                     /gene_synonym="HOX24; OsHox24"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gaacacacacactactgcgactgctagtgctctggtcttacattcgacgaactgatcgatattcgatacgacgtctcctcctacctggagcttgggaaaaatggagagcgactgccagttcttggtggcgccgccgcagccgcacatgtactacgacacggcggcggcggcggtggacgaggcgcagttcttgcggcagatggtggccgcggcggatcaccacgcggccgccgctgggagaggaggcggcgacggcgacggcggcggcggcggcggcggtggcggggagaggaagcggcggttcacggaggagcaggtgcggtcgctggagacgacgttccacgcgcggcgggccaagctggagccgcgggagaaggcggagctggcgcgggagctcgggctgcagccgcgccaggtggccatctggttccagaacaagcgcgcccggtggcgctccaagcagatcgagcacgactacgccgcgctccgcgcccagtacgacgccctccacgcccgcgtcgagtcgctcaggcaggagaagctcgccctcgcagaccaggtggatgagctgagggggaagctgaacgagcggcaagaccagagcggcagctgcgacggcggcggcgccgaaggggacgacgacgacaagaggaatagcgtgatgaacgcgagcagcagcggcctcgtggaggaggactacgtgagctgcctcgcggtgccggtggtggacgtctcggaggacggctcggcggcgtgcggcgggtcgtcgtacgagtacgaccatcacctagactacttgggcggcggccagctgcccgatccgttctgcggcatgccggatctgtgggagatatggccaatggtggaatggaacgcagtagcatgatcatgctaatcaatcagcgtagcatacagtatataaatatatatgtgtatgagtacgtgttgtattgggtctatatagatattttgctgctgttgctgctgctggcttgtgcagtcagttggtccggagagatcgactagagccgcggcgctcgtaagctagacgggagagcagattagagatggaggatgcaaccggccggccggcaaaccatgcaacaatgcaaatccacacatgcattgcgttgcacagatagaaatcctccggccggtcgatcgccgagtcttgctgcttgttatgctaggatgctacattaattattcatgttcgtgaatctggctcccctgcctcggagcccgttcgtgcacatatgtgaaacatatatatcaacgctgcgcatgtgtgccatgcccatgcgcatgccggcgcttgtcgtccatgctttgaaaaaaaaaaaaaaaaaaaaaaaaa

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