LOCUS       NM_001401492            1523 bp    mRNA    linear   PLN 14-FEB-2022
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 1
            (LOC4325788), mRNA.
ACCESSION   NM_001401492 XM_015778811
VERSION     NM_001401492.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK241312.1 and AP014957.1.
            
            On Feb 14, 2022 this sequence version replaced XM_015778811.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK241312.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020310
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-431               AK241312.1         4-434
            432-434             AP014957.1         11167632-11167634
            435-459             AK241312.1         438-462
            460-462             AP014957.1         11167660-11167662
            463-1523            AK241312.1         466-1526
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..1523
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /note="homeobox protein knotted-1-like 1"
                     /db_xref="GeneID:4325788"
     exon            1..396
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    199..201
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /note="upstream in-frame stop codon"
     CDS             202..1107
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /note="P0035H10.13; putative knotted1-type homeobox
                     protein; B1146F03.18; knotted1-type homeobox protein OSH6;
                     Homeobox protein HOS16; Homeobox protein OSH6;
                     LOC_Os01g19694"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 1"
                     /protein_id="NP_001388421.1"
                     /db_xref="GeneID:4325788"
                     /translation="

MEDLYSIHPGISRVGGAASEASGVGVVVGGGGGSSSSDLTELMKAQIAGHPRYPTLLSAYIECRKVGAPPEVASLLKEIGRERRAGGGGGGAGQIGVDPELDEFMEAYCRVLVRYKEELSRPFDEAASFLSSIQTQLSNLCSGATSPPATTATHSDEMVGSSDEDQCSGETDMLDIGQEQSSRLADHELKEMLLKKYSGCLSRLRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFINQRKRHWKPSDGMRFALMEGVAGGSSGTTLYFDTGTIGP"

     misc_feature    325..438
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:427505"
     misc_feature    481..624
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    622..711
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9FP29.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    763..828
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    886..1002
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            397..516
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /inference="alignment:Splign:2.1.0"
     exon            517..667
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /inference="alignment:Splign:2.1.0"
     exon            668..918
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1523
                     /gene="LOC4325788"
                     /gene_synonym="HOS16; OSH6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agctgctgaattcccccatgagcctctgcctccctgcctgcccccgtatgtagcaagaacaagaacaccagcgagtaacacaggctcgctacagtggtactagattaccgcttgtgcgggcatagtgatcgtctatagttgtgaattgcgatgcagcagcataggtggtgagctgctgcggctgctgctgctggtacgtagatggaggatctgtacagcatccacccggggatctcgcgggtcggcggcgcggcgagcgaggcgtccggcgtgggcgtcgtcgtcggcggcggcggcgggtcgtcgtcgtcggatctgacggagctcatgaaggctcagatcgccggtcacccgcgctacccgaccctcctctccgcctacatcgagtgtcgcaaggtgggagcgcctccggaggtggcgtcgctgctgaaggagatcggccgggagaggcgcgccggcggcggcggcggcggcgccgggcagatcggcgtcgaccccgagctcgacgagttcatggaggcgtactgccgggtgctggtgcgctacaaggaggagctgtcccggccgttcgacgaggcggcgtctttcctcagcagcatccagacgcagctcagcaacctctgcagcggcgccacctcgccgccggccaccaccgccacgcactccgatgaaatggtggggtcctccgacgaagaccagtgctcgggggagactgatatgctagatatagggcaagagcaaagctcccgcttagctgaccacgaactcaaggaaatgcttctgaagaagtacagtggctgcctcagccggctccggtccgagttcctgaagaagcggaagaaagggaagctaccaaaggacgcacggtcggcactgcttgaatggtggaacacacactaccgctggccatatcccacggaagaagataagctgaggcttgcagcgaggacaggtcttgacccaaagcagatcaacaattggttcatcaaccagaggaagaggcactggaagccatcggacgggatgcggttcgcgctcatggagggcgtggcgggtggatcgtccgggacgacgctctacttcgacactggcacaattggaccatgaattcatttttgagcaatgccgcctcttgagaaaattggccatttaggcagtaatagtaggacatggtatttggtggtgattgtgtctagctatgatcaatctttcagcaggtcagtgttattcagttcagggtaaagtaattgcctcattgttttggcagatcatgtgtatatggcatcgtaccaaatcaaaatgtataatcgttaggtaatatatatcttggggagacctgaaaaggctgttattagtagtttcatgtaatggctcaactcaagggttgtgagtaatctttgtccacactgcgtacccagctggactgttagataggccgaggacttgaaaaaggtaagtttacctgtactaaaatgtttgcctattattttgtctatatttataaattcatttgttcggacttc

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