LOCUS       NM_001401468            2754 bp    mRNA    linear   PLN 14-FEB-2022
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC9-like (LOC4325622), mRNA.
ACCESSION   NM_001401468 XM_015788973
VERSION     NM_001401468.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014957.1, AB101652.1, CI119231.1 and CI229819.1.
            
            On Feb 14, 2022 this sequence version replaced XM_015788973.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00008650,
                              SAMN02716058 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-264               AP014957.1         32009716-32009979   c
            265-480             AP014957.1         32009394-32009609   c
            481-648             AB101652.1         1-168
            649-861             AP014957.1         32008664-32008876   c
            862-1266            AP014957.1         32008160-32008564   c
            1267-1368           AP014957.1         32007969-32008070   c
            1369-1581           AP014957.1         32007672-32007884   c
            1582-1756           AP014957.1         32007412-32007586   c
            1757-1953           AP014957.1         32007130-32007326   c
            1954-2206           CI119231.1         1-253
            2207-2754           CI229819.1         1-548
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..2754
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /note="homeobox-leucine zipper protein ROC9-like"
                     /db_xref="GeneID:4325622"
     exon            1..264
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    124..126
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /note="upstream in-frame stop codon"
     CDS             196..2547
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /note="putative homeobox protein GLABRA2; P0460E08.22;
                     P0512C01.11; putative homeodomain protein; GL2-type
                     homeodomain protein; GLABRA 2-like homeobox protein 9;
                     HD-ZIP protein ROC9; Homeodomain transcription factor
                     ROC9; LOC_Os01g55549; Protein RICE OUTERMOST CELL-SPECIFIC
                     9"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC9"
                     /protein_id="NP_001388397.1"
                     /db_xref="GeneID:4325622"
                     /translation="

MGTNRPRPRTKDFFAAPALSLTLAGVFGRKNGPAASGGDGVEEGDEEVQAAGEAAVEISSENAGPGCRQSQSGGGSGEDGGHDDDDGEGSNKKRRRKNYHRHTAEQIRIMEALFKESPHPDERQRQQVSKQLGLSARQVKFWFQNRRTQIKAVQERHENSLLKSELEKLQDEHRAMRELAKKPSRCLNCGVVATSSDAAAAATAADTREQRLRLEKAKLKAEIERLRGTPGKSAADGIASPPCSASAGAMQTNSRSPPLHDHDGGFLRHDDDKPRILELATRALDELVGMCSSGEPVWVRGVETGRDILNYDEYVRLFRRDHGGSGDQMAGWTVEASRECGLVYLDTMHLVHTFMDVDKWKDLFPTMISKAATLEMISNREDDGRDGVLQLMYAELQTLTPMVPTRELYFARYCKKLAAERWAIVDVSFDESETGVHASSAVRCWKNPSGCLIEEQNNGRCKMTWVEHTRCRRCTVAPLYRAVTASGVAFGARRWVAALQLQCERMVFAVATNVPTRDSTGVSTLAGRRSVLKLAHRMTSSLCRTTGGSCDMAWRRAPKGGSGGGGDDDIWLTSRENAGDDPGEPQGLIACAAASTWLPVNPTALLDLLRDESRRPEWDVMLPGKSVQSRVNLAKGKDRTNCVTAYAARPEEEEERGGKWVLQDVCTNPCESTIAYAAIDAAALQPVIAGHDSSGVHLLPCGFISVMPDGLESKPAVITASRRGGEASGAGSLVTVAFQVPASPSAAAATLSPDSVEAVTVLVSSTLRNIRKALGCDSCEEEF"

     misc_feature    order(472..486,490..492,550..552,568..570,607..609,
                     613..618,625..630,634..642,646..648)
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(478..480,487..489,616..618,625..630,637..639)
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    490..648
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    1012..1707
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1096..1101,1132..1134,1204..1206,1210..1212,
                     1243..1245,1255..1257,1267..1269,1276..1281,1294..1299,
                     1378..1380,1384..1395,1402..1404,1411..1413,1417..1419,
                     1423..1425,1471..1473,1525..1527,1531..1542,1546..1548,
                     1582..1584,1588..1590,1594..1596,1600..1602,1606..1608,
                     1612..1614,1630..1632,1636..1644,1648..1656,1663..1668,
                     1675..1677)
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     exon            265..530
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            531..648
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            649..861
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            862..1266
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1267..1368
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1581
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1582..1756
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            1757..2046
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            2047..2133
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
     exon            2134..2754
                     /gene="LOC4325622"
                     /gene_synonym="GL2-9; Roc9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tgtaaaatgccatgtatctagtaccagtagaacagttgtactacctcctgatggtctcacgtaacttctttgttccctttctcttcaattacgccattgccgtcttgcccggtcgatcaaccctagctttctaagccctacaaaagacagcatccatctgctagtgttagcttagccttcagagttcagagagagatggggaccaaccggccgcggccacgaaccaaggacttcttcgcagctccggcgctctccctcacactggcaggcgtgttcggccggaaaaatggacctgcggcgtcgggtggagacggggtggaggaaggcgacgaggaggtgcaggctgcaggcgaggcggcggtggagatcagcagcgagaacgcggggccggggtgtagacagtcccagtccggcggtggctccggggaagacggcggccatgacgacgacgacggagagggtagtaataagaagaggaggaggaagaactaccacaggcacaccgccgaacaaatcaggatcatggaagcgctattcaaagagtccccacatccggatgagaggcagcggcagcaggtcagtaagcagctcggcctctctgcacgccaggtcaagttctggtttcagaaccgacgaactcagatcaaggcggttcaggagcgacacgagaactcgctgctcaagtccgagctggagaagctccaggacgagcaccgcgcgatgagagagctcgccaagaagccatctcgctgcctaaactgcggcgtcgtggcaacctccagcgacgccgccgccgccgccacggcggcggacacccgtgaacagcggctgcgactcgagaaagccaagctcaaagctgagatagagaggctgcgagggacgccaggaaagtccgccgccgatggaatcgcctcgccgccgtgctccgcgtccgcgggcgccatgcagacgaacagcaggagcccgccgttgcacgaccacgacggcggcttcttacgccacgacgacgacaagccgaggatcttggagctggccacccgtgcgctggacgagctggttgggatgtgctcctccggcgagcctgtgtgggtgcggggcgtcgagaccggcagggacattctgaactacgacgagtacgtgcgcttgttccgccgcgaccacggtggttccggcgatcagatggccggctggacggttgaggcttccagggaatgtggactagtttaccttgacacgatgcatcttgtgcacactttcatggacgtggacaagtggaaggacctattccctaccatgatctcaaaggcagcgacgctggaaatgatcagcaaccgcgaagacgatggccgagacggcgtcctgcaactgatgtatgcagagcttcagacactgacaccaatggtgcccacgagggagttatacttcgcccgctactgcaagaagctggccgcggagagatgggcgatcgtcgacgtgtccttcgacgagtctgagactggcgtccacgcgtcgtcggcggtcaggtgctggaagaacccatccggctgcctcatcgaagagcagaacaacggccggtgcaagatgacctgggtggagcacaccagatgccgccggtgcacggtcgcgccgttgtaccgggcggtcaccgcgagcggcgtggcgttcggcgcgagacgctgggtggccgcgctccagctccagtgcgagaggatggtcttcgccgtggcgaccaacgttccaacgagggactcgaccggggtctccacgctcgcgggcaggaggagcgttctgaaactggcgcaccggatgacgtcgagcctctgccgcaccaccggtggatcgtgtgacatggcgtggcgcagggcgccgaaaggaggcagcggcggcggtggcgacgacgacatctggctgacgtcccgggagaacgccggcgacgaccctggcgagccgcaggggctgatcgcgtgcgccgcggcgtcgacgtggctgccggtgaatccgacggctctcctcgacttactgagggatgaatcacggcgaccagagtgggacgtgatgctacccggaaaatctgttcagagccgcgtgaatcttgcaaaggggaaggaccgtaccaactgcgtcaccgcctacgccgctcgaccggaagaagaagaagagagaggcggcaagtgggtcctccaggacgtctgcaccaacccctgcgagtcgacgatcgcgtacgcggcgatcgacgccgccgcgctgcagccggtcatcgccgggcacgactcgagcggcgtgcacctcctgccgtgcggattcatctcggtgatgccggacgggctcgagtccaagccggcggtgatcacggcgtcgaggaggggaggcgaggcttcgggggccggatcgctggttaccgtggcgttccaggtcccggccagcccgtcggcggcggcggccacgctctcgccggactcggtggaggccgtgacggtcctggtctcctccactctgcgtaacatcaggaaagccttggggtgcgactcgtgcgaggaggaattctagtccacgggacgcggaaatattctactcctacttcggattcgttattcgtatgatactccacgactccacgtgaccatgtttgcaaagtaaatttgcatcgtgacttaccatgaacataagtgtacagctaaagggatactcgtactatagaactacacggtactgtaaagtcaacaattaagcgttaaaaatcccccgtcttgcaga

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