LOCUS       NM_001398034            1392 bp    mRNA    linear   PLN 07-DEC-2021
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein HOX3
            (LOC4326566), mRNA.
ACCESSION   NM_001398034 XM_015790075
VERSION     NM_001398034.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from AP014957.1.
            
            On Dec 7, 2021 this sequence version replaced XM_015790075.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN07627064,
                              SAMN07627077 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-379               AP014957.1         25883577-25883955   c
            380-612             AP014957.1         25883056-25883288   c
            613-692             AP014957.1         25882035-25882114   c
            693-1392            AP014957.1         25880204-25880903   c
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..1392
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="homeobox-leucine zipper protein HOX3"
                     /db_xref="GeneID:4326566"
     exon            1..379
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    196..198
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="upstream in-frame stop codon"
     CDS             307..996
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="HD-ZIP protein HOX3; Homeodomain transcription
                     factor HOX3; LOC_Os01g45570"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX3"
                     /protein_id="NP_001384963.1"
                     /db_xref="GeneID:4326566"
                     /translation="

MMGATSPSGLELTMAVPGLSSSGSEGAGCNNNNAGGGCNMRDLDINQPASGGEEEEFPMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAATGPPAVRPPPSSAAAAAPSPFHPRRPSAAF"

     misc_feature    307..552
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JKX1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(532..546,550..552,601..603,619..621,658..660,
                     664..669,676..681,685..693,697..702)
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    532..699
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(538..540,547..549,667..669,676..681,688..690)
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    703..837
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JKX1.1);
                     Region: Leucine-zipper"
     misc_feature    703..834
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
     misc_feature    898..993
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0JKX1.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            380..612
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /inference="alignment:Splign:2.1.0"
     exon            613..692
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /inference="alignment:Splign:2.1.0"
     exon            693..1392
                     /gene="LOC4326566"
                     /gene_synonym="HOX3; OsHox3; OsJ_002698"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

tgacagtgggaccatatgctaatagtatagtaagcaactattgtataaattgactattaaattggctatagataaattggagctagtagttggctatactgttaaccttgctctaaaggggcactgccactgttaaaagttctaacgtgtccatgcctctaccctggcagcctcgccctggaaacgccccttatataacgcctccccaggcttctactccttttcaacctgtctttgtctccctccgcctttgccccgccttccctgcccttttctcttgctgagccgcttctgcattggcttgtgatgatgggggccacttctccgtcaggcctggagctcaccatggctgtccccggcctcagctcctctggttcagaaggggccggttgcaacaacaacaacgccggtggcggctgcaacatgagggacctggacatcaaccagccggcgagcggcggcgaggaggaggagttcccgatgggcagcgtggaggaggacgaggaggagaggggcgtcggtgggccccaccgccccaagaagctccgcctctccaaggagcagtcccgcctcctcgaggagagcttccgcctcaaccataccctcacgccgaagcaaaaggaggccttggcgatcaaactgaagctgcggccgaggcaggtggaggtctggtttcagaaccgtagggcaaggacgaagctgaagcagacggagatggagtgcgagtacctgaagcgctgcttcgggtcgctgacggaggagaaccgccggctgcagcgggaggtggaggagctgcgggcgatgcgggtggccccgcccacggtgctctcgccgcacaccaggcagccgctcccggcgtccgcgctcaccatgtgcccccgctgcgagcgcatcaccgccgccaccggcccgcctgccgtgcgcccgccgccgtcgtcagccgccgccgccgccccctcgcccttccaccctcgccgcccctctgcggccttctaggcccaaggtctcgcatcctaaaggccacaaaaagatgggcctcgccgtcccgtgtaaattgaaggagacgacgcagcggtagagggccccgtgttggcgttgttgcgttgggtccagtcgtctcagaggagtcagaggcgtggacaaaatgtttgttgcattgtttgtgttccattggtcgttgatcttagcttgatgatctgtgattcgcgccttgctcgtctaggtttctcttgggccgacgcatgatcttttttccccgtgtcggaccgtattgggccttttgagatcgacgggccccctccttgtttcgcatgtggacatgttatttcgtccttttgggccaacaattcagcacggtggccaacggtgcgtagttcgtcgtcgttttctttc

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