GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2022-01-24 11:43:20, GGRNA : RefSeq release 209 (Nov, 2021)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), transcript variant X1, mRNA. (3093 bp)
misc_feature 506..742 /gene="LOC4328436" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 782..922 /gene="LOC4328436" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 923..1204 /gene="LOC4328436" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_...
XM_015768522.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), transcript variant X2, mRNA. (2409 bp)
misc_feature 239..520 /gene="LOC4328436" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 653..2008 /gene="LOC4328436" /note="Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal...
XM_015768524.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 7-like (LOC4333232), mRNA. (3863 bp)
misc_feature 1144..1410 /gene="LOC4333232" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 1441..1590 /gene="LOC4333232" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 1603..1941 /gene="LOC4333232" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /...
XM_015773926.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 3-like (LOC4336992), mRNA. (3356 bp)
misc_feature 242..2737 /gene="LOC4336992" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 326..739 /gene="LOC4336992" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 773..916 /gene="LOC4336992" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 917..1249 /gene="LOC4336992" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway...
XM_015780526.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute PNH1-like (LOC9269490), transcript variant X3, mRNA. (3678 bp)
misc_feature 887..3445 /gene="LOC9269490" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 887..1318 /gene="LOC9269490" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1349..1498 /gene="LOC9269490" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1499..1843 /gene="LOC9269490" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_015788315.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute PNH1-like (LOC9269490), transcript variant X2, mRNA. (3440 bp)
misc_feature 649..3207 /gene="LOC9269490" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 649..1080 /gene="LOC9269490" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1111..1260 /gene="LOC9269490" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1261..1605 /gene="LOC9269490" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference...
XM_015788316.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 1D-like (LOC4342138), mRNA. (3654 bp)
Gly-rich_Ago1; pfam12764" /db_xref="CDD:289530" misc_feature 752..3346 /gene="LOC4342138" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 752..1183 /gene="LOC4342138" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1217..1363 /gene="LOC4342138" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1364..1708 /gene="LOC4342138" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease...
XM_015787025.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute MEL1-like (LOC9269807), mRNA. (2714 bp)
misc_feature 269..493 /gene="LOC9269807" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:318646" misc_feature 536..670 /gene="LOC9269807" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:312283" misc_feature 671..1015 /gene="LOC9269807" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_...
XM_026022702.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 11-like (LOC4333733), mRNA. (3638 bp)
misc_feature 673..903 /gene="LOC4333733" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:318646" misc_feature 946..1080 /gene="LOC4333733" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:312283" misc_feature 1081..1509 /gene="LOC4333733" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_...
XM_015774404.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 13-like (LOC4334374), mRNA. (4728 bp)
misc_feature 634..978 /gene="LOC4334374" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(781..783,826..828,859..861,871..873,925..927, 946..948,952..954) /gene="LOC4334374" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1114..2460 /gene="...
XM_015775890.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 2-like (LOC4336991), mRNA. (3479 bp)
misc_feature 919..1092 /gene="LOC4336991" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 1123..1266 /gene="LOC4336991" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 1321..1644 /gene="LOC4336991" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:396648" misc_feature 1750..3066 /gene="LOC4336991" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of...
XM_015780525.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 14-like (LOC4342603), mRNA. (3522 bp)
misc_feature 654..3236 /gene="LOC4342603" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 663..1076 /gene="LOC4342603" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 1107..1253 /gene="LOC4342603" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1332..1652 /gene="LOC4342603" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:280352" misc_feature order(1416..1418,1461..1463,1488..1490,1500..1502, 1554..1556,1575..1577,1581..1583) /gene="...
XM_015789956.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 18-like (LOC4343201), mRNA. (3833 bp)
misc_feature 1256..1465 /gene="LOC4343201" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:318646" misc_feature 1508..1657 /gene="LOC4343201" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:312283" misc_feature 1739..2056 /gene="LOC4343201" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:308013" misc_feature order(1817..1819,1862..1864,1889..1891,1901..1903, 1955..1957,1976..1978,1982..1984) /gene="LOC4343201" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2147..3454 /...
XM_015789430.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 16-like (LOC4342886), mRNA. (3369 bp)
misc_feature 413..2926 /gene="LOC4342886" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 440..940 /gene="LOC4342886" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:293095" misc_feature 974..1123 /gene="LOC4342886" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1175..1510 /gene="LOC4342886" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:280352" misc_feature order(1250..1252,1295..1297,1349..1351,1361..1363, 1412..1414,1433..1435,1439..1441) /gene="LOC4342886" /...
XM_015792104.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/os/Argonaute+%22PAZ+domain%22
lang : en | div : | spe : os | query_string : Argonaute "PAZ domain" | format : html | download :

0.000 | 0.000 | search_start;
0.077 | 0.077 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.088 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.145 | 0.057 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))%26((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.147 | 0.003 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]