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2024-11-21 21:46:51, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Oryza sativa Japonica Group protein argonaute 3-like (LOC4336992), mRNA. (3356 bp)
misc_feature 545..739 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 773..916 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 917..1249 /gene="LOC4336992" /gene_synonym="AGO3; OsAGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named...
Synonym: AGO3; OsAGO3
NM_001419866.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), transcript variant X1, mRNA. (2991 bp)
misc_feature 797..1078 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1211..2566 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component...
Synonym: AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545
XM_015768524.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 11-like (LOC4333733), mRNA. (3109 bp)
misc_feature 651..881 /gene="LOC4333733" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 924..1058 /gene="LOC4333733" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1059..1412 /gene="LOC4333733" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_...
XM_066308808.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 13-like (LOC4334374), mRNA. (4134 bp)
misc_feature 609..953 /gene="LOC4334374" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(756..758,801..803,834..836,846..848,900..902, 921..923,927..929) /gene="LOC4334374" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1089..2435 /gene="...
XM_015775890.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), mRNA. (3003 bp)
feature 490..726 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 766..906 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 907..1188 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a...
Synonym: AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545
NM_001409344.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 7-like (LOC4333232), mRNA. (3860 bp)
misc_feature 1132..1398 /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1429..1578 /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1615..1983 /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4" /note="PAZ domain; Region: PAZ; pfam02170" /db_xref="CDD:460472" misc_feature 2065..3390 /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7;...
Synonym: AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4
NM_001418339.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 2-like (LOC4336991), mRNA. (3478 bp)
N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1120..1263 /gene="LOC4336991" /gene_synonym="AGO2; OsAGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1342..1632 /gene="LOC4336991" /gene_synonym="AGO2; OsAGO2" /note="PAZ domain; Region: PAZ;...F., Guo,W., Wang,W., Li,X., Lan,Y., Du,L., Li,S., Fan,Y., Zhou,Y., Zhao,H. and Zhou,T. TITLE ARGONAUTE 2 increases rice susceptibility to rice black-streaked dwarf virus infection by epigenetically...
Synonym: AGO2; OsAGO2
NM_001419865.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/os/Argonaute+%22PAZ+domain%22
lang : en | div : | spe : os | query_string : Argonaute "PAZ domain" | format : html | download : 

0.000 | 0.000 | search_start;
0.084 | 0.084 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.100 | 0.016 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.143 | 0.043 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))%26((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.145 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]