GGRNA ver.2 Mus musculus (mouse) Help | Advanced search | Japanese    Previous release (v1)

2025-06-18 07:25:09, GGRNA : RefSeq release 229 (Mar, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Mus musculus stabilizer of axonemal microtubules 5 (Saxo5), transcript variant X2, mRNA. (1725 bp)
misc_feature 369..1202 /gene="Saxo5" /gene_synonym="1700019B03Rik; Tex45" /note="Domain of unknown function (DUF4601); Region: DUF4601; pfam15373" /db_xref="CDD:464681" ORIGIN // acacctatgtgacagcattatctgggagtactcttgaggtcacaatgacctgggccagaccatcttgggttaacctctagaaaggaccagaagaccatcccctgggataaccagggccagaagggatcagagggatcagacaggagccaaggtcaagattcattaacccagtaaggtaggtagagcggggcctcacgatgcctgtgtgcccgttgtccctggagttcctcaaggcctcacacttttctttgggtcctgatccgcggctgcatgatggcactatgcagggcacatcgcacagggacttcccagcctattccgctgtcaccttggtccagcccccctcgtcagcaccacagcaaggcacaatcttccaaagggaagcgcggtgggcttcccagaagcatgtatcggagatgcg...
position 37
Synonym: 1700019B03Rik; Tex45
XM_017313002.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus NudC domain containing 3 (Nudcd3), transcript variant 3, mRNA. (3663 bp)
cgggcagctgcgaggagtaaagccatcctcactgggcacagtgcttccctgaatagaaatgaggttccgttactaaggaaggaaagggatagaaatgctggtgagtcatcggcacagatcgggggatgctgaggtaagtttattcacaccgagggtgaagtttttctgcgaggacattttgggagcactgttcagtcagtgacaatctggggtccctctgggaaattattgtgttctgggaccaggcaggtaaaggaggacctggaaaatgagagtgcatccaggaaatggtgaggtcacagtgaccttggaaagggccacctcattttgccccaacggttcagagtgactttctaagccactgagaaaggtggtggccaggaggcagcaagcagtttccttgaacagaaggtgctgtctttagcagtgcccatgccctgtcagtaaggagaggtcagtgggagatgggacctcacagggtcctaagagcttgatgcttatgtgttaatgtgacagtgtgggaaggcctggaatgagagggaatgttcttgcaagatacctgcaggtgggccacatacacacctgggttcctcaggagac...
position 1198
Synonym: mKIAA1068
NM_001419337.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus predicted gene, 33106 (Gm33106), ncRNA. (3634 bp)
atagggaatataatttaatgaaagtgagctgagaggcatgagagaaggtttcctgctggctttctacatgtctgcaaagaacatgtatgacctcagtgacctgtactcaaaatttcactccacaatgagtcttgtgccagacacatggacggtgagcagggcagcaaggaaaccggcgtgcacttgcgcgcacacccacacctgcagtttctggtgataatccgcatggtgagatcatcactgaagccgcattgtggtcccgcagggagagcaagggtcgagcaggagatgccaggtcactgtgacctgcgggggttcaggtcccgcgacaacctcctgaacgcagtgcggcacgggcgacgcctggcacaagaacctgagcgaaagctgcgacacacccatccatccactctggggaaaataatagtgactgaaaacccctagcttggcatctagggccctcgctgaccttggggagtcccctctgcccaccggcctcagtttgcccaccttcaggcagagactgcgagtccagcgcagtggcgttccaggcgcgggcgttcccgggagcgggaggggcgccttcctccggtcaccttc...
position 1570
XR_390562.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus exocyst complex component 2 (Exoc2), transcript variant 1, mRNA. (4277 bp)
atcactgcagtggtgtggggagggttcacaaggacctgtatgtggaggccctgtcacacccacaaggcctggggaaggcttgtggtcttcaatgcagcctaaagatgaagccaggctcctcggcaaggcagcactccctccccctctgccacttcccacgcggtgaaatgtcttgctccatagctggaaagaggctgctctggcatgggctgtgttttgtaaagatttgaggtgccccaagtgaccaggcactgagctgtgactcagtggtgagtggcttgcgcagtagagtcaggtcattgtgacctgcaggcagctttcacctcactccatccttccgtcagcctctgttgcacttcactcttcagactgatctgtggataatgtaggctcctcttctagagttgacaaaactaattccagagcacagcatatgtaccctgtggattatttaaggtaaatgagtgtatgtttatttatcacagtgactggaagtagaaattgtaatcctttgttgcaaaataagtatgtaccgcattgtctcctccctgtgtgctgttattatatctgacataaacaaactaaattccaaagcagaag...
position 3777
Synonym: 2410030I24Rik; Gm29675; Sec5; Sec5l1
NM_025588.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus exocyst complex component 2 (Exoc2), transcript variant 2, mRNA. (4376 bp)
atcactgcagtggtgtggggagggttcacaaggacctgtatgtggaggccctgtcacacccacaaggcctggggaaggcttgtggtcttcaatgcagcctaaagatgaagccaggctcctcggcaaggcagcactccctccccctctgccacttcccacgcggtgaaatgtcttgctccatagctggaaagaggctgctctggcatgggctgtgttttgtaaagatttgaggtgccccaagtgaccaggcactgagctgtgactcagtggtgagtggcttgcgcagtagagtcaggtcattgtgacctgcaggcagctttcacctcactccatccttccgtcagcctctgttgcacttcactcttcagactgatctgtggataatgtaggctcctcttctagagttgacaaaactaattccagagcacagcatatgtaccctgtggattatttaaggtaaatgagtgtatgtttatttatcacagtgactggaagtagaaattgtaatcctttgttgcaaaataagtatgtaccgcattgtctcctccctgtgtgctgttattatatctgacataaacaaactaaattccaaagcagaag...
position 3903
Synonym: 2410030I24Rik; Gm29675; Sec5; Sec5l1
NM_001360093.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus exocyst complex component 2 (Exoc2), transcript variant X4, mRNA. (4356 bp)
atcactgcagtggtgtggggagggttcacaaggacctgtatgtggaggccctgtcacacccacaaggcctggggaaggcttgtggtcttcaatgcagcctaaagatgaagccaggctcctcggcaaggcagcactccctccccctctgccacttcccacgcggtgaaatgtcttgctccatagctggaaagaggctgctctggcatgggctgtgttttgtaaagatttgaggtgccccaagtgaccaggcactgagctgtgactcagtggtgagtggcttgcgcagtagagtcaggtcattgtgacctgcaggcagctttcacctcactccatccttccgtcagcctctgttgcacttcactcttcagactgatctgtggataatgtaggctcctcttctagagttgacaaaactaattccagagcacagcatatgtaccctgtggattatttaaggtaaatgagtgtatgtttatttatcacagtgactggaagtagaaattgtaatcctttgttgcaaaataagtatgtaccgcattgtctcctccctgtgtgctgttattatatctgacataaacaaactaaattccaaagcagaag...
position 3885
Synonym: 2410030I24Rik; Gm29675; Sec5; Sec5l1
XM_036158117.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus predicted gene, 19911 (Gm19911), transcript variant X3, ncRNA. (5628 bp)
agtgagcagtctgccaactgagccacacccacagccccacagccaaccaaatgtgtttctgtggcatatgtcaagttggctattcagaggaattgcaggcccttgcagatgggttccaaggggctgtttttttgaaggaagccattcacttctgcccactgtcactagacagtgggtatagggtatttctcatacttccccccacccctgctttgctttttgcataggaaagatcttgcctacaggaagtcactaaggaggtctgattggcccagatagaaatgaccaactacaggtcaccctgacctgagagacttcatctgcatcataaggctggccacttcttttcccctaaaagcccaaccccattttttgtttaccatggtgaaagactccatcatcctgccccacttcttgatcttttgttgttttgagacagggcttcattctatggtccaagctggtctggaagaggacaccagcctccctcagcttcctgcgtgctgggattacaggtgtgcacccccaggcagctcccttgcctctctctgagtgcctggcattagtccctctccacgttagtgcatgtgcataagtgag...
position 3125
XR_001780211.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus predicted gene, 19911 (Gm19911), transcript variant X1, ncRNA. (5691 bp)
agtgagcagtctgccaactgagccacacccacagccccacagccaaccaaatgtgtttctgtggcatatgtcaagttggctattcagaggaattgcaggcccttgcagatgggttccaaggggctgtttttttgaaggaagccattcacttctgcccactgtcactagacagtgggtatagggtatttctcatacttccccccacccctgctttgctttttgcataggaaagatcttgcctacaggaagtcactaaggaggtctgattggcccagatagaaatgaccaactacaggtcaccctgacctgagagacttcatctgcatcataaggctggccacttcttttcccctaaaagcccaaccccattttttgtttaccatggtgaaagactccatcatcctgccccacttcttgatcttttgttgttttgagacagggcttcattctatggtccaagctggtctggaagaggacaccagcctccctcagcttcctgcgtgctgggattacaggtgtgcacccccaggcagctcccttgcctctctctgagtgcctggcattagtccctctccacgttagtgcatgtgcataagtgag...
position 3188
XR_001780209.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus predicted gene, 19911 (Gm19911), transcript variant X2, ncRNA. (6153 bp)
agtgagcagtctgccaactgagccacacccacagccccacagccaaccaaatgtgtttctgtggcatatgtcaagttggctattcagaggaattgcaggcccttgcagatgggttccaaggggctgtttttttgaaggaagccattcacttctgcccactgtcactagacagtgggtatagggtatttctcatacttccccccacccctgctttgctttttgcataggaaagatcttgcctacaggaagtcactaaggaggtctgattggcccagatagaaatgaccaactacaggtcaccctgacctgagagacttcatctgcatcataaggctggccacttcttttcccctaaaagcccaaccccattttttgtttaccatggtgaaagactccatcatcctgccccacttcttgatcttttgttgttttgagacagggcttcattctatggtccaagctggtctggaagaggacaccagcctccctcagcttcctgcgtgctgggattacaggtgtgcacccccaggcagctcccttgcctctctctgagtgcctggcattagtccctctccacgttagtgcatgtgcataagtgag...
position 3650
XR_001780210.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus macoilin 1 (Maco1), transcript variant X2, mRNA. (7404 bp)
tctcaggcagcccagctaattgtgatgctaattgcctcctgctacctgatctacctttggtatagaagattgaggacccaaatgaccagtgacctagggctgtggtatttgtgccccttgcctgctcctggggactgctgcctcctgttgtcaccagtgtggactgtatcttcacctgtaggcacccccagagtgccctgcagcctgacctgaggaccgttgagagagcttctgtaggcgggtcccgtctctgaagagctaggtgagtgcttcagagctttgggctggctatcaggtcattgtgacctgtaactggttacaactagacagaagtacacagaatttatgccagtgctggtcccaccagccagcccacaggggctgggcaagcaggaagtacatttgcttcctcgctaaaattgatgaggttgtagcacttgtaggaagagttccttaatccctcagaagccctggtagggcagagcaggcttagctctgagagatgggagtccatgatggtagggaagtactgtcctctaccctttgatccgactggaattttgaaggttgtaactattacctatatttgtatcttgtttc...
position 2317
Synonym: 1110007C24Rik; 9230118A01Rik; C61; Tmem57
XM_006539100.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus natural killer tumor recognition sequence (Nktr), transcript variant X11, mRNA. (9143 bp)
aaagattaagtgaatgttcctagagtcacagagctttttgggtttttgttttatttgtagcaattaaaaggtttcagagttccttcaacatattgaagccatcaaaaataatttattgggctgaaaatgaagctgaatggtggaacatttgcttggtgtgtcctaggccttggtttcactttcaagtactgcaataacagtaatgatagtaatagaggtgggtgtgatggcacacagctgtgatcccaacacttgggaggcagaggccagggattttgagtttaaggattttgaggtcatcctgacctacaatggtaagactgtgtcttaaatccaaagcacgtgagccagcaaggtactcatactcagtaggtaaaggcacttgtgaccaagcctcataacctgagttcagtccctgggactcacatggtggaaggcgagaaccagctcctgcagatggtcctctgagctccacattcattcacactgttgcacacacgcaccctcacacgtgtgcatgcatgtgcacacacacacaaaatcatgttaaaaatagaattactaccatgcattgaatatttaaaaatttattataactca...
position 2170
Synonym: 5330401F18Rik; D9Wsu172e
XM_030244115.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

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GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]