GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-11-21 21:41:07, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Mus musculus stabilizer of axonemal microtubules 5 (Saxo5), transcript variant X2, mRNA. (1725 bp)
misc_feature 369..1202 /gene="Saxo5" /gene_synonym="1700019B03Rik; Tex45" /note="Domain of unknown function (DUF4601); Region: DUF4601; pfam15373" /db_xref="CDD:464681" ORIGIN // acacctatgtgacagcattatctgggagtactcttgaggtcacaatgacctgggccagaccatcttgggttaacctctagaaaggaccagaagaccatcccctgggataaccagggccagaagggatcagagggatcagacaggagccaaggtcaagattcattaacccagtaaggtaggtagagcggggcctcacgatgcctgtgtgcccgttgtccctggagttcctcaaggcctcacacttttctttgggtcctgatccgcggctgcatgatggcactatgcagggcacatcgcacagggacttcccagcctattccgctgtcaccttggtccagcccccctcgtcagcaccacagcaaggcacaatcttccaaagggaagcgcggtgggcttcccagaagcatgtatcggagatgcg...
position 37
Synonym: 1700019B03Rik; Tex45
XM_017313002.3 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus TNFAIP3 interacting protein 2 (Tnip2), mRNA. (1966 bp)
cagcagattcttgcttacaaggatgacttcaaatcagaaagggcagatcgggaacgagcgcacagtaggattcaagagctggaggaaaagatcatgtccttgatgtaccaagtgtcccagagacaggactcccgggagccaggaccctgtcggattcatacggggaacaaaactgccaagtacttagagatggatgcactggagcatgtgacccctggcggctggaggcctgagtctaggtcccaacagatggaaccttctgcagagggtgggcatgtgtgcacagcccagagaggtcagggtgaccttcagtgccctcattgcctgcggtgcttcagtgatgagcaaggcgaggcattcctcaggcacctgtctgagtgctgccaatgagccagacattgcccgtgtgacccatgaccaccatagctgctctaagggactgggaggggtcctcagactcagttttcaactcagtgtgttgcattctcctgggatctagggcccaaatgggcagggtcactggaaggtcatcttgttttcatttgaccatggtgagacttggtcagagggaactattgacagagcaggaggaagaggtgg...
position 1279
Synonym: 1810020H16Rik; ABIN-2
NM_139064.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus predicted gene, 33106 (Gm33106), ncRNA. (3634 bp)
atagggaatataatttaatgaaagtgagctgagaggcatgagagaaggtttcctgctggctttctacatgtctgcaaagaacatgtatgacctcagtgacctgtactcaaaatttcactccacaatgagtcttgtgccagacacatggacggtgagcagggcagcaaggaaaccggcgtgcacttgcgcgcacacccacacctgcagtttctggtgataatccgcatggtgagatcatcactgaagccgcattgtggtcccgcagggagagcaagggtcgagcaggagatgccaggtcactgtgacctgcgggggttcaggtcccgcgacaacctcctgaacgcagtgcggcacgggcgacgcctggcacaagaacctgagcgaaagctgcgacacacccatccatccactctggggaaaataatagtgactgaaaacccctagcttggcatctagggccctcgctgaccttggggagtcccctctgcccaccggcctcagtttgcccaccttcaggcagagactgcgagtccagcgcagtggcgttccaggcgcgggcgttcccgggagcgggaggggcgccttcctccggtcaccttc...
position 1570
XR_390562.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus NudC domain containing 3 (Nudcd3), transcript variant 3, mRNA. (3663 bp)
cgggcagctgcgaggagtaaagccatcctcactgggcacagtgcttccctgaatagaaatgaggttccgttactaaggaaggaaagggatagaaatgctggtgagtcatcggcacagatcgggggatgctgaggtaagtttattcacaccgagggtgaagtttttctgcgaggacattttgggagcactgttcagtcagtgacaatctggggtccctctgggaaattattgtgttctgggaccaggcaggtaaaggaggacctggaaaatgagagtgcatccaggaaatggtgaggtcacagtgaccttggaaagggccacctcattttgccccaacggttcagagtgactttctaagccactgagaaaggtggtggccaggaggcagcaagcagtttccttgaacagaaggtgctgtctttagcagtgcccatgccctgtcagtaaggagaggtcagtgggagatgggacctcacagggtcctaagagcttgatgcttatgtgttaatgtgacagtgtgggaaggcctggaatgagagggaatgttcttgcaagatacctgcaggtgggccacatacacacctgggttcctcaggagac...
position 1198
Synonym: mKIAA1068
NM_001419337.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus exocyst complex component 2 (Exoc2), transcript variant 2, mRNA. (4376 bp)
atcactgcagtggtgtggggagggttcacaaggacctgtatgtggaggccctgtcacacccacaaggcctggggaaggcttgtggtcttcaatgcagcctaaagatgaagccaggctcctcggcaaggcagcactccctccccctctgccacttcccacgcggtgaaatgtcttgctccatagctggaaagaggctgctctggcatgggctgtgttttgtaaagatttgaggtgccccaagtgaccaggcactgagctgtgactcagtggtgagtggcttgcgcagtagagtcaggtcattgtgacctgcaggcagctttcacctcactccatccttccgtcagcctctgttgcacttcactcttcagactgatctgtggataatgtaggctcctcttctagagttgacaaaactaattccagagcacagcatatgtaccctgtggattatttaaggtaaatgagtgtatgtttatttatcacagtgactggaagtagaaattgtaatcctttgttgcaaaataagtatgtaccgcattgtctcctccctgtgtgctgttattatatctgacataaacaaactaaattccaaagcagaag...
position 3903
Synonym: 2410030I24Rik; Gm29675; Sec5; Sec5l1
NM_001360093.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Mus musculus exocyst complex component 2 (Exoc2), transcript variant 1, mRNA. (4277 bp)
atcactgcagtggtgtggggagggttcacaaggacctgtatgtggaggccctgtcacacccacaaggcctggggaaggcttgtggtcttcaatgcagcctaaagatgaagccaggctcctcggcaaggcagcactccctccccctctgccacttcccacgcggtgaaatgtcttgctccatagctggaaagaggctgctctggcatgggctgtgttttgtaaagatttgaggtgccccaagtgaccaggcactgagctgtgactcagtggtgagtggcttgcgcagtagagtcaggtcattgtgacctgcaggcagctttcacctcactccatccttccgtcagcctctgttgcacttcactcttcagactgatctgtggataatgtaggctcctcttctagagttgacaaaactaattccagagcacagcatatgtaccctgtggattatttaaggtaaatgagtgtatgtttatttatcacagtgactggaagtagaaattgtaatcctttgttgcaaaataagtatgtaccgcattgtctcctccctgtgtgctgttattatatctgacataaacaaactaaattccaaagcagaag...
position 3777
Synonym: 2410030I24Rik; Gm29675; Sec5; Sec5l1
NM_025588.2 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus exocyst complex component 2 (Exoc2), transcript variant X4, mRNA. (4356 bp)
atcactgcagtggtgtggggagggttcacaaggacctgtatgtggaggccctgtcacacccacaaggcctggggaaggcttgtggtcttcaatgcagcctaaagatgaagccaggctcctcggcaaggcagcactccctccccctctgccacttcccacgcggtgaaatgtcttgctccatagctggaaagaggctgctctggcatgggctgtgttttgtaaagatttgaggtgccccaagtgaccaggcactgagctgtgactcagtggtgagtggcttgcgcagtagagtcaggtcattgtgacctgcaggcagctttcacctcactccatccttccgtcagcctctgttgcacttcactcttcagactgatctgtggataatgtaggctcctcttctagagttgacaaaactaattccagagcacagcatatgtaccctgtggattatttaaggtaaatgagtgtatgtttatttatcacagtgactggaagtagaaattgtaatcctttgttgcaaaataagtatgtaccgcattgtctcctccctgtgtgctgttattatatctgacataaacaaactaaattccaaagcagaag...
position 3885
Synonym: 2410030I24Rik; Gm29675; Sec5; Sec5l1
XM_036158117.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus macoilin 1 (Maco1), transcript variant X2, mRNA. (7404 bp)
tctcaggcagcccagctaattgtgatgctaattgcctcctgctacctgatctacctttggtatagaagattgaggacccaaatgaccagtgacctagggctgtggtatttgtgccccttgcctgctcctggggactgctgcctcctgttgtcaccagtgtggactgtatcttcacctgtaggcacccccagagtgccctgcagcctgacctgaggaccgttgagagagcttctgtaggcgggtcccgtctctgaagagctaggtgagtgcttcagagctttgggctggctatcaggtcattgtgacctgtaactggttacaactagacagaagtacacagaatttatgccagtgctggtcccaccagccagcccacaggggctgggcaagcaggaagtacatttgcttcctcgctaaaattgatgaggttgtagcacttgtaggaagagttccttaatccctcagaagccctggtagggcagagcaggcttagctctgagagatgggagtccatgatggtagggaagtactgtcctctaccctttgatccgactggaattttgaaggttgtaactattacctatatttgtatcttgtttc...
position 2317
Synonym: 1110007C24Rik; 9230118A01Rik; C61; Tmem57
XM_006539100.4 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/mm/iub%3aaggtcannrtgacct
lang : en | div : | spe : mm | query_string : iub:aggtcannrtgacct | format : html | download : 

0.000 | 0.000 | search_start;
0.109 | 0.109 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct))?source=Mus musculus (house mouse)?to=0&format=json
0.207 | 0.098 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcaaaatgacct)%7C(nt:aggtcaatatgacct)%7C(nt:aggtcaagatgacct)%7C(nt:aggtcaacatgacct)%7C(nt:aggtcataatgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcagaatgacct)%7C(nt:aggtcagtatgacct)%7C(nt:aggtcaggatgacct)%7C(nt:aggtcagcatgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaaagtgacct)%7C(nt:aggtcaatgtgacct)%7C(nt:aggtcaaggtgacct)%7C(nt:aggtcaacgtgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcagagtgacct)%7C(nt:aggtcagtgtgacct)%7C(nt:aggtcagggtgacct)%7C(nt:aggtcagcgtgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcaccgtgacct))?source=Mus musculus (house mouse)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.215 | 0.008 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]