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2024-11-01 10:27:43, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Mus musculus predicted gene 10435 (Gm10435), long non-coding RNA. (4300 bp)
ataaggatgagagtcttccgggtctcaaattgatccaggagcccagtgaccagtgggtggccgagtgtagccaagatgtctcgttcctggtatgcctgggcccgagttttactccgtagggggatgaacttggcggcacagaacatcttgtttcctttgtgctgaacccttttcacaaacccaaacacacccctggggtgaagaaagagagaggggacccacagtaggtaccatgctgagagtgtcctgggaaggactggaagactgtggagcgggtgaggaagcggtacctcccaatctcttcttgaacgtcatagaaggaatgcagttttctccgatagacttgattttcggcatctagcttgtcccctgcagtcaaagcacaggacatggacagtataggcaagccatgaattgaccccactgctctcccaatgcaatgacaagggctgctccctggcccctgtagcctgccctgggagggccttggcagaaccagccaactcacccccatggaccagcagctctgccttgcagagcacctgtccacctgcattattggcaacacatgtgtagacaccggcatcgtgtggagccacg...
position 3396
NR_189016.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus potassium large conductance calcium-activated channel, subfamily M, beta member 2 (Kcnmb2), transcript variant X1, mRNA. (7088 bp)
ttaggatactaagtgactaagtcaaaggacacatttccttgaacagtaagtgggtaactccgagttaatgccccatattggatgtcttttggaaagtttagaagactattaaattgccattaagcttatggaataactggctgtttgaaatgtgatctgcttgctacctgcatttcataaagaaatgcaagcaattgcattaggctacactaatcacggccaaattttattttcttgtctaaaccagaatttaattatacagatatgaaaagggaacttaataacactgacttccaatctcttcttggctggaaatttaccaagaacattatctaattcagcaataggagattatattctctggttagaagattcagttaaaaatttaatctctttgtttccaatataactgaattactacgtgtttaaccaaggatgggtttcttttggtcggacattagaggatggaatttggagacagaatgtcttctccccacagcctcaacttcctttctgtctctgcaattctgatagctgctgaagctctccgaagtgcagaccctcccagtgtggagcgttgtctgctgtacttctcacagg...
position 2855
Synonym: 2700049B16Rik; 3110031N04Rik
XM_006535548.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus opioid receptor, delta 1 (Oprd1), transcript variant X1, mRNA. (7566 bp)
cagaacgatgtcccagctgtcgctgggttcctgggatgaggcttttgaagacttaacaaaataggagaaaagggcaattttccgtgaacttttgttcctccttaagttctccaaatctttgcctttcaaaatgtactgtgcattttgcacggtgcattttttttaaagctccaaattgacagcgtaattctagactatcacaggtctctcttcctccccaaaatttccattccgttctctctacgaggtgggagggaagattgtgcctttggtttaaaaatgccctacagtttccaatctcttcttgatgtcctcgagctccagatgaatgctagaatctgatgttggcttcctctctcagattctcagttttcccgtcctgtagagtggactttctttgtagaatggctgcgaggattaattaggtaatgtatgtatagccacagggcttgtcactcagcaagtagctgtgactggaaaatagccagggtgcagggtcagagctggagacccagagggaaatgtgcattggcttctggggtgcactgaggagagaggagtctgagaatctggcctggagacctccgagaccccatggtg...
position 5886
Synonym: DOR; DOR-1; mDOR; Nbor
XM_006538628.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
PREDICTED: Mus musculus RAB GTPase activating protein 1 (Rabgap1), transcript variant X2, mRNA. (10194 bp)
agaagagggtaatgcagtggaaagaggcctagggagttttagaactttggtggacttgggctttgaatggaatccagtaaccaggccttcaggccccgattttacaattactgcttttcttccccctactctctttcctctttctttttccttttctttcttcttttttcttccttctttttccctttttcttcctcctcctctgttttgttttcaagacagggttttcctggctggcctctgaggtcactgcctctgcctccaaagagctggaactaccaccaactggcactacaatctcttcttgacaactttactcataaaacagaacctctagatccctcagatgatgactgagactggggatgcattttgtgtttagcaacactgctggtatgtcctatagaaaatggtggcattattgctactactaggacaacaacaataatgacaactaatactactaggggcaagtacagccacgaattcatgtgagcaaaggtgttctgtagaacactgttgtgagaatcttgattcctttaaaaaacacaaacacacacacacacacaaatataagaatttggttttgttttaatctca...
position 8741
Synonym: Gapcena; mKIAA4104
XM_006497997.5 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/mm/comp%3acaagaagagattg
lang : en | div : | spe : mm | query_string : comp:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.085 | 0.085 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Mus musculus (house mouse)?to=0&format=json
0.101 | 0.015 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Mus musculus (house mouse)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.101 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]