2024-11-01 08:47:39, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NR_189016 4300 bp RNA linear ROD 18-OCT-2023 DEFINITION Mus musculus predicted gene 10435 (Gm10435), long non-coding RNA. ACCESSION NR_189016 VERSION NR_189016.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4300) AUTHORS Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B and Wahlestedt C. CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group (Genome Network Project Core Group); FANTOM Consortium TITLE Antisense transcription in the mammalian transcriptome JOURNAL Science 309 (5740), 1564-1566 (2005) PUBMED 16141073 REFERENCE 2 (bases 1 to 4300) AUTHORS Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ, Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R, Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T, Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M, Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M, Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A, Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L, Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L, Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K, Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R, Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V, Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL, Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D, Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y, Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM, Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T, Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H, Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K, Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y, Suzuki H, Kawai J and Hayashizaki Y. CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The transcriptional landscape of the mammalian genome JOURNAL Science 309 (5740), 1559-1563 (2005) PUBMED 16141072 REMARK Erratum:[Science. 2006 Mar 24;311(5768):1713] REFERENCE 3 (bases 1 to 4300) AUTHORS Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, Brusic V, Chothia C, Corbani LE, Cousins S, Dalla E, Dragani TA, Fletcher CF, Forrest A, Frazer KS, Gaasterland T, Gariboldi M, Gissi C, Godzik A, Gough J, Grimmond S, Gustincich S, Hirokawa N, Jackson IJ, Jarvis ED, Kanai A, Kawaji H, Kawasawa Y, Kedzierski RM, King BL, Konagaya A, Kurochkin IV, Lee Y, Lenhard B, Lyons PA, Maglott DR, Maltais L, Marchionni L, McKenzie L, Miki H, Nagashima T, Numata K, Okido T, Pavan WJ, Pertea G, Pesole G, Petrovsky N, Pillai R, Pontius JU, Qi D, Ramachandran S, Ravasi T, Reed JC, Reed DJ, Reid J, Ring BZ, Ringwald M, Sandelin A, Schneider C, Semple CA, Setou M, Shimada K, Sultana R, Takenaka Y, Taylor MS, Teasdale RD, Tomita M, Verardo R, Wagner L, Wahlestedt C, Wang Y, Watanabe Y, Wells C, Wilming LG, Wynshaw-Boris A, Yanagisawa M, Yang I, Yang L, Yuan Z, Zavolan M, Zhu Y, Zimmer A, Carninci P, Hayatsu N, Hirozane-Kishikawa T, Konno H, Nakamura M, Sakazume N, Sato K, Shiraki T, Waki K, Kawai J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Imotani K, Ishii Y, Itoh M, Kagawa I, Miyazaki A, Sakai K, Sasaki D, Shibata K, Shinagawa A, Yasunishi A, Yoshino M, Waterston R, Lander ES, Rogers J, Birney E and Hayashizaki Y. CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I & II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420 (6915), 563-573 (2002) PUBMED 12466851 REFERENCE 4 (bases 1 to 4300) AUTHORS Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, Kiyosawa H, Kondo S, Yamanaka I, Saito T, Okazaki Y, Gojobori T, Bono H, Kasukawa T, Saito R, Kadota K, Matsuda H, Ashburner M, Batalov S, Casavant T, Fleischmann W, Gaasterland T, Gissi C, King B, Kochiwa H, Kuehl P, Lewis S, Matsuo Y, Nikaido I, Pesole G, Quackenbush J, Schriml LM, Staubli F, Suzuki R, Tomita M, Wagner L, Washio T, Sakai K, Okido T, Furuno M, Aono H, Baldarelli R, Barsh G, Blake J, Boffelli D, Bojunga N, Carninci P, de Bonaldo MF, Brownstein MJ, Bult C, Fletcher C, Fujita M, Gariboldi M, Gustincich S, Hill D, Hofmann M, Hume DA, Kamiya M, Lee NH, Lyons P, Marchionni L, Mashima J, Mazzarelli J, Mombaerts P, Nordone P, Ring B, Ringwald M, Rodriguez I, Sakamoto N, Sasaki H, Sato K, Schonbach C, Seya T, Shibata Y, Storch KF, Suzuki H, Toyo-oka K, Wang KH, Weitz C, Whittaker C, Wilming L, Wynshaw-Boris A, Yoshida K, Hasegawa Y, Kawaji H, Kohtsuki S and Hayashizaki Y. CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409 (6821), 685-690 (2001) PUBMED 11217851 REFERENCE 5 (bases 1 to 4300) AUTHORS Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K and Togawa Y. TITLE RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res 10 (11), 1757-1771 (2000) PUBMED 11076861 REFERENCE 6 (bases 1 to 4300) AUTHORS Carninci P, Shibata Y, Hayatsu N, Sugahara Y, Shibata K, Itoh M, Konno H, Okazaki Y, Muramatsu M and Hayashizaki Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res 10 (10), 1617-1630 (2000) PUBMED 11042159 REFERENCE 7 (bases 1 to 4300) AUTHORS Carninci P and Hayashizaki Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Methods Enzymol 303, 19-44 (1999) PUBMED 10349636 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL662809.14. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1210 AL662809.14 87398-88607 1211-1546 AL662809.14 89448-89783 1547-4300 AL662809.14 90450-93203 FEATURES Location/Qualifiers source 1..4300 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="11" /map="11 36.41 cM" gene 1..4300 /gene="Gm10435" /note="predicted gene 10435" /db_xref="GeneID:100038596" /db_xref="MGI:MGI:3642820" ncRNA 1..4300 /ncRNA_class="lncRNA" /gene="Gm10435" /product="predicted gene 10435" /db_xref="GeneID:100038596" /db_xref="MGI:MGI:3642820" ORIGIN
agcagtgtacttggtctccactgaggggtgagctcggaagaggtgatggggcagggtctgcttacctgaggtaggagatgacgcccatggccctgcaagaatgaaaacaccccatttgtgagttacaccaggcctgtcccacaggcaaggggtatgcatgggggtggggttgggggtgggggggctggaagaggaggcagaggctcctcagctgccagacagacacacgaaggacagggcgactccagatcaacagccctctaggtgggccatccactcaccagatgtctgagccctcgctcacaggattctgctcaatgatctctggggacacgaattcgggtgagccatacttgctgtactgtggctctgaaggggtgatcttttgggcaaagccaaagtcacagatcttgatgtcttcccgagctgggtgcaccatcaggatgttggggggctgtcagacagagttgagaagttgttcaaggctacacttcatgaaaaaggtaactcctaccctctgggcctaggagagcactgaagagtccttgaggctagtaaagggcagtggggagtccccaggaccgagaggggaatcacatctactccatgagagccaaaccctacccgaggtagtagaaaccaagcacaggctggctcccagctgtgcccaccacgagttctggggatgccgtgaatgcaatacctttatgtccaggtggaggataccatggctgtgcaaatagtgtaggccttccaccagctgctggatatagactttgacctgtggaaaatgccaggatcagtttggaaccagcccccaagaggctggctcaggaacctcctgaaggctgacccaggtgaggagccagcctcaggtacctcctgaagacctggtccaaatgaggggccagcctcagaaaactcatgaaggcctgacccaggtgaggggcaagcatcaggtacctcctgaaggcctgacccgggttgggggccagcttcaggtacctcctgaaggtctgacccaggtgaggggccagcctcaggtacctcctgaaggcctggcccaggtgaggggccgcctcaggtacctcttgaaggcctggcccaggtgaggagccagcctcaggtacctcctgaaggcctgacccgggtaaggggccagcctcaggtacctcctaaaggcctgatccgggtaaggggccagcctcaggtacctcctgaaggcctgacccaggtgaggggccagtctcaggtacctcctgaaggcctggcccaggtgaggggccagcctcaggtacctcttgaaggcctggcccaggtgaggggccagcctcaggtacctcctgaaagcctgacccgggtgaggagccagcctcaggtacctcctgaaggcctgacccgggtaaggggccagcctcaggtacctcctgaagacctagtccaaatgagggtccagcctcaggaacctcctgaaggcctgacccaggtgaggggccagcctcaggtacctcctgaaggcctggcccgggtgagaggccagcctcaggtacctcttgaaggcctggcccaggtgaggggccagcctcaggtacctcctgaaagcctgacccgggtgaggagccagcctcaggtacctcctgaaggcctgacccaggtaaggggccagcctcagatacctcctgaaggcctagtccaaatgagggtccagcctcaggaacctcctgaaggcctgacccaggtgaggggccagcctcaggaacctcctgaaggcctggcccaggtgagggaccagcatcaggtacctcctgaagacctgacccaggtaaggggccagcctcaggtacctcctgaaggcctggccctggtgaggagccagcctcaggtacctcctgaaagcctgacccgggtgagggactagcctcaggtacctcctgaagacctggcccaggtgaggggccagcctcagcctcctctattccataggagcttgcttcgatcatcaagccttcctcctcttaattcaggccccataggtcaagtgactgacaaagtcacaggtcaggaactgcaagccccagggctgggtgtttcccaaaggtgggctgagcctaaataggcaggaagcatcagtctgcttaaatgagggaggggcagatatcactagtacagctgttcccctatggtcaggacgggtggcagaggctggttatacctggctaccttggaagctacaagagactcaagtcaaaagaggctgtgtccggggactggaatgtaggctctgactctagggacacactcaggcaaggagaaggtagagattacctcggcttcagtcactacacccttcttgaagagccgatccagcagctcctcagacgagcacctgggtttcgttaaggaaaagccgcacatgactccccggggcctgtgctcccagaaaggtacccagacctcctgtgaaccacatctagaggtgctggtattctgatgaaggagagtggaatgatgacccctgggtcccagatgggtcacatccctgagaaagggaccttcagaaagaccctctggtgagtggggctgtgagcagcagcctaatggaacttggacactcttgcatctctgcacagagcccactccatgcagcccttcaccgggatcctagaacaaagctttaggagtgaaagggcagccagaatgtgaaataagtaagagccccaaacacgcccccatgggtgtgacggaggccaagagcagttggaatgggagccccctctccaatacctaagaggttacctctgagaggggtcccaggccatccttgctaagaatcaagattgtggcggcccccatctgtgacccacagaaaggaaagatctcatgtccaaaaccccaaccgtgccacttctagttgcaggctcaggagctgctgtcacacacagtcacagcagcaggaacaggatgctcagatgtggggctagtacatgtcatgatagcactgaggttgagggacccccacactcagcagctccagccccagtctgggacctgatgcctttttgaactctctcgggggttcaggtacaggatacagttccaagataaggatgagagtcttccgggtctcaaattgatccaggagcccagtgaccagtgggtggccgagtgtagccaagatgtctcgttcctggtatgcctgggcccgagttttactccgtagggggatgaacttggcggcacagaacatcttgtttcctttgtgctgaacccttttcacaaacccaaacacacccctggggtgaagaaagagagaggggacccacagtaggtaccatgctgagagtgtcctgggaaggactggaagactgtggagcgggtgaggaagcggtacctcccaatctcttcttgaacgtcatagaaggaatgcagttttctccgatagacttgattttcggcatctagcttgtcccctgcagtcaaagcacaggacatggacagtataggcaagccatgaattgaccccactgctctcccaatgcaatgacaagggctgctccctggcccctgtagcctgccctgggagggccttggcagaaccagccaactcacccccatggaccagcagctctgccttgcagagcacctgtccacctgcattattggcaacacatgtgtagacaccggcatcgtgtggagccacgtcagtcaacaccaaggagtatgtcgttccatcttgccgttggctcagccgggcactgctcgtcagctgggtgctgccctggacagacagaagatagcctggggtaccatcagcctatcctggaatatgccacacccttcccagagcagtccttccaatacctgctgtgtgcccagacccaggtgcaagtcagaagtggatggggaggtactggttagggctagagaggtggggctatggggtgggggttacagattgcatggtggggtgcatgaggccccttccacacccccatgtggtctcatgcatacatgcacccgtgccctccagctcccaaagcctgtctcctccccactgctgcctgggcctactcctaccttgtaccaggttactatgggtggtgggtggccttcaatgacagcatcaaactgtgccatgtcccctacttgtacttgtacatcctcaatagtgacctgcatggacggggcccctgggaaaggagggaagagaacctgtgtggagcgaccctcgggcttcatagccctaggcacatagccaaccatgtatatctctggtcagtaaagtcttatgtccctcgaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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