2024-05-17 10:42:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_148948 9851 bp mRNA linear ROD 08-NOV-2023 DEFINITION Mus musculus dicer 1, ribonuclease type III (Dicer1), transcript variant 2, mRNA. ACCESSION NM_148948 VERSION NM_148948.2 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 9851) AUTHORS Wang Y, Chen SY, Ta M, Senz J, Tao LV, Thornton S, Tamvada N, Yang W, Moscovitz Y, Li E, Guo J, Shen C, Douglas JM, Ei-Naggar AM, Kommoss FKF, Underhill TM, Singh N, Gilks CB, Morin GB and Huntsman DG. TITLE Biallelic Dicer1 Mutations in the Gynecologic Tract of Mice Drive Lineage-Specific Development of DICER1 Syndrome-Associated Cancer JOURNAL Cancer Res 83 (21), 3517-3528 (2023) PUBMED 37494476 REMARK GeneRIF: Biallelic Dicer1 Mutations in the Gynecologic Tract of Mice Drive Lineage-Specific Development of DICER1 Syndrome-Associated Cancer. REFERENCE 2 (bases 1 to 9851) AUTHORS Reyes-Castro RA, Chen SY, Seemann J, Kundu ST, Gibbons DL and Arur S. TITLE Phosphorylated nuclear DICER1 promotes open chromatin state and lineage plasticity of AT2 tumor cells in lung adenocarcinomas JOURNAL Sci Adv 9 (30), eadf6210 (2023) PUBMED 37494452 REMARK GeneRIF: Phosphorylated nuclear DICER1 promotes open chromatin state and lineage plasticity of AT2 tumor cells in lung adenocarcinomas. REFERENCE 3 (bases 1 to 9851) AUTHORS Das O, Kundu J, Ghosh A, Gautam A, Ghosh S, Chakraborty M, Masid A, Gauri SS, Mitra D, Dutta M, Mukherjee B, Sinha S and Bhaumik M. TITLE AUF-1 knockdown in mice undermines gut microbial butyrate-driven hypocholesterolemia through AUF-1-Dicer-1-mir-122 hierarchy JOURNAL Front Cell Infect Microbiol 12, 1011386 (2022) PUBMED 36601302 REMARK GeneRIF: AUF-1 knockdown in mice undermines gut microbial butyrate-driven hypocholesterolemia through AUF-1-Dicer-1-mir-122 hierarchy. Publication Status: Online-Only REFERENCE 4 (bases 1 to 9851) AUTHORS Roa J, Ruiz-Cruz M, Ruiz-Pino F, Onieva R, Vazquez MJ, Sanchez-Tapia MJ, Ruiz-Rodriguez JM, Sobrino V, Barroso A, Heras V, Velasco I, Perdices-Lopez C, Ohlsson C, Avendano MS, Prevot V, Poutanen M, Pinilla L, Gaytan F and Tena-Sempere M. TITLE Dicer ablation in Kiss1 neurons impairs puberty and fertility preferentially in female mice JOURNAL Nat Commun 13 (1), 4663 (2022) PUBMED 35945211 REMARK GeneRIF: Dicer ablation in Kiss1 neurons impairs puberty and fertility preferentially in female mice. Publication Status: Online-Only REFERENCE 5 (bases 1 to 9851) AUTHORS Gao H, Jin Z, Bandyopadhyay G, Wang G, Zhang D, Rocha KCE, Liu X, Zhao H, Kisseleva T, Brenner DA, Karin M and Ying W. TITLE Aberrant iron distribution via hepatocyte-stellate cell axis drives liver lipogenesis and fibrosis JOURNAL Cell Metab 34 (8), 1201-1213 (2022) PUBMED 35921818 REFERENCE 6 (bases 1 to 9851) AUTHORS Bernstein E, Kim SY, Carmell MA, Murchison EP, Alcorn H, Li MZ, Mills AA, Elledge SJ, Anderson KV and Hannon GJ. TITLE Dicer is essential for mouse development JOURNAL Nat Genet 35 (3), 215-217 (2003) PUBMED 14528307 REMARK GeneRIF: role in lethality early in development Erratum:[Nat Genet. 2003 Nov;35(3):287] REFERENCE 7 (bases 1 to 9851) AUTHORS Doi N, Zenno S, Ueda R, Ohki-Hamazaki H, Ui-Tei K and Saigo K. TITLE Short-interfering-RNA-mediated gene silencing in mammalian cells requires Dicer and eIF2C translation initiation factors JOURNAL Curr Biol 13 (1), 41-46 (2003) PUBMED 12526743 REFERENCE 8 (bases 1 to 9851) AUTHORS Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC and Ferrin TE. TITLE BayGenomics: a resource of insertional mutations in mouse embryonic stem cells JOURNAL Nucleic Acids Res 31 (1), 278-281 (2003) PUBMED 12520002 REFERENCE 9 (bases 1 to 9851) AUTHORS Nicholson RH and Nicholson AW. TITLE Molecular characterization of a mouse cDNA encoding Dicer, a ribonuclease III ortholog involved in RNA interference JOURNAL Mamm Genome 13 (2), 67-73 (2002) PUBMED 11889553 REFERENCE 10 (bases 1 to 9851) AUTHORS Araki K, Imaizumi T, Sekimoto T, Yoshinobu K, Yoshimuta J, Akizuki M, Miura K, Araki M and Yamamura K. TITLE Exchangeable gene trap using the Cre/mutated lox system JOURNAL Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999) PUBMED 10512203 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC124364.4. On Nov 1, 2006 this sequence version replaced NM_148948.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF430845.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375 [ECO:0006172] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-205 AC124364.4 149768-149972 c 206-393 AC124364.4 129820-130007 c 394-556 AC124364.4 129040-129202 c 557-687 AC124364.4 128153-128283 c 688-822 AC124364.4 127148-127282 c 823-983 AC124364.4 126353-126513 c 984-1152 AC124364.4 121922-122090 c 1153-1625 AC124364.4 119991-120463 c 1626-1758 AC124364.4 112794-112926 c 1759-2001 AC124364.4 111015-111257 c 2002-2156 AC124364.4 110201-110355 c 2157-2289 AC124364.4 108645-108777 c 2290-2365 AC124364.4 107805-107880 c 2366-2505 AC124364.4 106796-106935 c 2506-2685 AC124364.4 104873-105052 c 2686-2899 AC124364.4 104571-104784 c 2900-3053 AC124364.4 104233-104386 c 3054-3236 AC124364.4 103073-103255 c 3237-3342 AC124364.4 102739-102844 c 3343-3518 AC124364.4 102086-102261 c 3519-4299 AC124364.4 100422-101202 c 4300-4455 AC124364.4 98385-98540 c 4456-5326 AC124364.4 94294-95164 c 5327-5595 AC124364.4 92498-92766 c 5596-5758 AC124364.4 90323-90485 c 5759-5834 AC124364.4 90147-90222 c 5835-9851 AC124364.4 85762-89778 c FEATURES Location/Qualifiers source 1..9851 /organism="Mus musculus" /mol_type="mRNA" /db_xref="taxon:10090" /chromosome="12" /map="12 54.83 cM" gene 1..9851 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="dicer 1, ribonuclease type III" /db_xref="GeneID:192119" /db_xref="MGI:MGI:2177178" exon 1..205 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 206..393 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" misc_feature 247..249 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="upstream in-frame stop codon" CDS 280..6000 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /EC_number="3.1.26.3" /note="isoform 2 is encoded by transcript variant 2; endoribonuclease Dicer; double-strand-specific ribonuclease mDCR-1; Dicer1, Dcr-1 homolog" /codon_start=1 /product="endoribonuclease Dicer isoform 2" /protein_id="NP_683750.2" /db_xref="GeneID:192119" /db_xref="MGI:MGI:2177178" /translation="
MAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCESCPSCPRILGLTASILNGKCDPEELEEKIQKLERILRSDAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTLLRKIHALCEEYFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKPALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISSCNSSLAESDNYCKHSTTVVPEHAAHQGATRPSLENHDQMSVNCKRLPAESPAKLQSEVSTDLTAINGLSYNKNLANGSYDLVNRDFCQGNQLNYFKQEIPVQPTTSYPIQNLYNYENQPKPSNECPLLSNTYLDGNANTSTSDGSPAVSTMPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNSEKWEKDEMTKDCLLANGKLGEACEEEEDLTWRAPKEEAEDEDDFLEYDQEHIQFIDSMLMGSGAFVRKISLSPFSASDSAYEWKMPKKASLGSMPFASGLEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 373..966 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="DEXH-box helicase domain of endoribonuclease Dicer; Region: DEXHc_dicer; cd18034" /db_xref="CDD:350792" misc_feature order(373..384,391..393,442..465,586..588,775..777, 868..870) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350792" misc_feature order(550..555,622..627,700..702,706..711,718..720, 793..801) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:350792" misc_feature 1060..1344 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Partner-binding domain of the endoribonuclease Dicer; Region: Dicer_PBD; cd15903" /db_xref="CDD:277191" misc_feature order(1075..1080,1087..1089,1093..1098,1273..1278, 1285..1290,1297..1299,1306..1311,1318..1320) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Trbp binding interface [polypeptide binding]; other site" /db_xref="CDD:277191" misc_feature 1363..1941 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="C-terminal helicase domain of the endoribonuclease Dicer; Region: SF2_C_dicer; cd18802" /db_xref="CDD:350189" misc_feature order(1594..1602,1810..1812,1867..1869,1873..1875) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:350189" misc_feature order(1822..1824,1828..1830,1903..1905,1909..1911) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2137..2403 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2905..3273 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(3094..3096,3133..3135,3151..3153,3163..3165, 3217..3219,3241..3243,3247..3249) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239209" misc_feature 4135..>4410 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Ribonuclease III family; Region: RIBOc; smart00535" /db_xref="CDD:197778" misc_feature order(4186..4191,4198..4203,4210..4212,4219..4224, 4231..4236,4240..4248,4276..4278) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature 5227..5985 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="dsRNA-specific ribonuclease [Transcription]; Region: Rnc; COG0571" /db_xref="CDD:223644" exon 394..556 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 557..687 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 688..822 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 823..983 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 984..1152 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 1153..1625 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 1626..1758 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 1759..2001 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2002..2156 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2157..2289 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2290..2365 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2366..2505 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2506..2685 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2686..2899 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2900..3053 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3054..3236 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3237..3342 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3343..3518 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3519..4299 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 4300..4455 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 4456..5326 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 5327..5595 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 5596..5758 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 5759..5834 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 5835..9851 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" ORIGIN
ggtcggggcgcggcgcggtgcggcgcgggcggctccgggcccaggtgaatggagtaacctgacagcgggaacgagacgacggcgagcggcaggaaatggcggcggcggcggcggcgccgggcggcaccgggaggcctgggctgtgacgcgcgcgccggagcggggtccgatggttctggaaggcccgcggcgcccagtgctgcagtaagctgtgctagaacaaaatgcaatgaaagaaacactggatgattgaaaagccctgctttgcagcccctcagcatggcaggcctgcagctcatgacccctgcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataacatttatacgccaagaaaataccaggttgagctgctggaagcagctctggaccataacacaattgtgtgcttgaacactggctcagggaagacgttcatcgcggtcctgctcaccaaagagctggcccatcagatcaggggcgacctcaacccgcatgcaaaaaggaccgtgttcctcgtcaactctgcaaaccaggttgctcaacaagtgtcagccgtcagaactcactcggatctcaaggttggagagtactcagacctagaagtaaatgcatcttggacaaaagagagatggagccaagagtttactaagcaccaggttctcattatgacttgctatgtcgccttgactgttttgaaaaatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatcttgcgattctagaccacccctatcgtgaaattatgaagctctgtgagagttgtccatcatgccctcgaattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattggaagagaagattcagaaactggagcgaattctcaggagtgacgctgagacggcgactgacttggtggtcctggacagatacacttctcagccttgtgagattgtggtagactgtggaccgtttactgacagaagtgggctgtatgagagattgctgatggagttagaagcagcacttgattttatcaatgattgtaatgtagctgtacattcaaaggaaagagattctactttgatttccaaacaaatcctctcagactgccgtgcagtgttggttgttctgggaccctggtgtgcagataaagtagctgggatgatggtaagagaacttcagaagtacatcaaacatgagcaagaggagctacacaggaagttcctattgtttacagacaccttgttaaggaaaatacacgccctgtgtgaagagtacttctcacctgcctcacttgacctgaagtatgtaactcccaaagtcatgaaactgctcgagatcctgcgcaaatacaagccctatgagcgacagcagtttgaaagtgttgagtggtacaataacaggaatcaggataattacgtgtcctggagtgattccgaggatgacgatgatgacgaagaaattgaagaaaaagaaaagccagagacaaattttccttctccgtttaccaatattttatgtgggattatttttgtggaaagaagatacacagcagttgtcctaaacagattgataaaggaagctggcaaacaagatccagagctggcttatatcagcagcaactttataactggacacggcattggaaagaaccagcctcgcagcaaacagatggaggcggagttcagaaagcaggaggaggtacttaggaaatttcgagctcatgagaccaacctgctcattgcaacaagtgttgtagaagagggtgtggatattcccaagtgcaatttggtggttcgttttgatttgcctacagagtatcgatcatatgtccagtctaaaggacgggcacgagcgccgatctctaattacgtaatgttagcagatacagacaagataaagagctttgaagaagacctcaagacctacaaagctattgaaaagatcttaaggaacaagtgttcgaagtcagcggatggtgctgaggcggacgtccatgctggtgtagatgatgaggatgctttcccgccatatgtgctgaggcctgatgatgggggtcctcgagtcacaatcaacactgccattggacacatcaacagatattgtgctcgattaccaagtgatccgtttacgcatctagctcccaaatgtagaacccgagaattgcctgatggtacattttattcaactctttatcttccgattaactcacctcttcgagcctccattgttggtccaccgatggacagtgtacggttggctgaaagagtggtagctctcatttgctgtgaaaaactgcacaaaattggtgaactggatgaacacttgatgccagttgggaaagagactgttaaatatgaagaagagctggacttacatgacgaggaggagaccagtgttcccgggagaccagggtccacaaaacgacggcagtgctaccccaaagcaattccagagtgcttgagggagagttaccccaaacccgaccagccttgttacctgtatgtgataggaatggtcttaactacccccctccctgatgaactcaacttcaggcggcggaagctctacccacctgaggacaccacaagatgctttgggatcctgacagccaaacccatacctcagattcctcactttcctgtgtatacacgctctggagaggtcaccatatccatcgagctgaagaagtctggtttcacattgtctcaacaaatgctcgagctgattacaagattgcaccagtacatattctcacatattctccggcttgagaagcctgccctggagtttaaacctacaggcgcggagtcagcctactgtgttctacctcttaatgttgttaatgactccggcactttggacattgactttaaattcatggaggatattgagaagtcggaagctcggataggcattcctagcaccaagtattcaaaggaaacaccgtttgtctttaagttagaagattaccaagatgcagtgatcattccaagataccgcaattttgatcagcctcatcgattttatgtagctgatgtatatacggatcttaccccactcagtaaatttccttcccctgaatatgaaacttttgcagaatattataaaacaaagtataaccttgacctgaccaatctcaaccagccactgctggatgttgaccacacatcttccagactgaaccttttgacacctcggcatttgaatcagaaggggaaagcacttcctctaagcagtgctgagaagaggaaggccaaatgggaaagtctgcagaacaaacagatcctggttccggaactctgtgctatacatccaatcccagcatcactgtggagaaaagcggtttgtctccccagcatactgtatcgccttcactgccttctgactgcagaggaactaagagctcagacagccagcgatgctggtgtgggtgtcagatcacttcccgtggattttagataccctaacttagacttcgggtggaaaaaatctattgatagcaagtctttcatctcaagctgtaactcctcgttggctgagagtgataattactgtaagcacagcacaactgtagtccctgaacatgctgcacatcaaggtgctactagaccctccttagaaaaccatgaccaaatgtctgtgaactgcaaaaggttgcccgctgagtcacctgctaagctccaaagtgaggtttcaacggatcttacagcaattaatggtctttcttacaataaaaaccttgccaatggcagttatgatttagttaacagagacttttgccaaggaaatcagctgaattacttcaagcaggaaatacctgtacaaccaactacctcatatcccattcagaatttgtacaattatgagaaccagcccaagcccagcaatgaatgtcctctactgagtaatacgtaccttgatgggaacgctaacacatctacctcagatggaagccccgcggtgtccacgatgcctgccatgatgaatgctgttaaagcactcaaggacaggatggactctgagcagagcccttctgttgggtactcctcaaggactcttggccccaatccgggactgattctccaggctttgacactgtcaaatgccagtgatgggtttaacctggagcggcttgagatgcttggcgactcctttttaaagcatgctatcaccacatatctgttttgcacgtaccctgatgctcatgaaggccgcctttcatatatgagaagcaaaaaggtcagcaactgtaacctgtatcgccttggcaagaagaagggactgcccagccgcatggtggtgtcgatattcgatcctcctgtgaattggcttcctcctggttatgtggtaaaccaagacaaaagtaactcagagaagtgggaaaaggatgaaatgacaaaagactgcttgctggctaatggcaaactgggtgaggcctgtgaggaggaggaggacctgacgtggagggcccccaaggaggaggccgaggatgaggacgacttcctggagtatgaccaggagcatatccagtttatagacagcatgctcatgggctcgggcgccttcgtgaggaaaatctctctgtcgcccttctcagcctccgactctgcatacgaatggaagatgcccaagaaggcctccttgggcagtatgccgtttgcctcgggccttgaggattttgattacagctcttgggatgcgatgtgctatctggatcctagcaaagccgttgaagaggatgactttgtggtaggtttctggaatccatcagaagagaactgtggcgtcgacacagggaagcagtccatttcttacgacttgcacacggagcagtgcattgctgacaagagcatagcggactgtgtggaggccctgctgggctgctacttaaccagctgcggcgagagggctgctcagctcttcctctgttcgctggggctgaaggtgctcccagtaatcaaaaggaccagccgggagaaggccttggaccctgctcaggagaacggaagcagccaacaaaagagcctttcagggagctgtgcctctccagttggcccacgctcctctgcagggaaagacttggagtacggctgcctgaagatcccaccgaggtgcatgtttgaccatccagacgcagagaaaaccctcaaccacctgatatctgggtttgaaacttttgagaagaaaattaactatagattcaagaataaggcttatcttctgcaggcttttacacacgcctcctaccactacaacactatcactgattgttaccagcgcttagaattcctgggagatgcgattttggactacctcataaccaagcacctttatgaagacccacggcagcattctccaggggtcttgactgacttgcgctctgcccttgtcaataacaccatctttgcatcattggctgtgaagtatgactaccacaagtactttaaagctgtctctcctgagctctttcatgttattgatgactttgtgaagtttcagcttgagaagaacgaaatgcaaggaatggactctgagcttaggagatccgaggaggatgaggagaaagaagaggatatcgaagtccccaaggccatgggggacatttttgagtctcttgctggtgccatttatatggacagtgggatgtctctggaggtggtctggcaggtgtactatccgatgatgcagcctctaatagaaaagttttctgcaaatgtgcctcgttctccagtgagagaattgctcgagatggaaccagaaactgccaagtttagcccagcggagagaacttatgatggaaaggtcagagtcaccgtggaagtggtgggaaaggggaaatttaaaggtgttggccggagctacaggatcgccaagtctgctgcagcacgaagggccctccgcagcctcaaagctaaccagcctcaggttcctaacagctgaagcttccggactcacaggcggcaagacagcggaccagaaccacagctccacggcacaaggatggttcgggctgacacagaacaggaaaactgaaggcagaatttaaagtttgataatgagatagataacagaataaaacatgtaatatgtgtataaactctttggaactaattttggtttagtttttgcgcagacacaatcttgtcttctttacccaccctgctttgcttagtcacaggagtgctttaatcctggtgtttgttagcaaggttttaaaatcattttgacaggtttttggttttgtttgttttgacatttaatttctgtcgactttgcttggtgttagaggccatggagcttaacctctaacagtccctagaactgggtcgtcctgaccttgcggtcccttacactatacctgtcctgctgcggtgtcaagcccaacaaaaagggcagagtgtgcaaaggaagcccccgtgctgtggagggcagtggaggcggggccgggcggaccccgggtactattgcacggaatagtaagggacagattttgagtccgtgttggctgctggtgagtggaggccaggctttcagacgccacattgtgctgcagagaggattcttgccttaaaaggaaggacttgatagtttgcttttttattttgccttccccttattatgcattggatgaaatggggtggcagctcactagggcacttgcaatggaactattgcaggtaggatttctgttgtttgtactgaagacattctaaaacccagagtgagtatatagatttttaaagcatcattatagacaggatacatgactagatgcccggttttcctcagaacttcctgccaggtggtcccagtggcggaaatgcccggtcagctgctgttctgacgaaatgagcctgagatgcagtgtacctagacacgccacaggtctgtactaggcagtgttgccagagtcaccaaagctgtgctctctttcctatggggtcagcattgtggcagactgccaggaccaacccgtctggggtagaagtcaccagtttagataaactaggtcattagttcatctcagactcagaaagtaaagctgtttaggcatttgctgaaggtctcgcctgggcttgtgggcccctcttcacttacacacctcagtccctccctttgcctgcattttcccgttggtgctacgtttatgtatcatgcttgaagtttaattttttgcactgtgactataatacctcttaatttacatttaaaaatgctgtatgggttgcccgtgccctcccaccgacacacaggagagctttgctgcaatttgccctcttacgcttgaagtctcagcaggctgagccagggtagctcgcgttccccacacatctcctgaggctgatgcttcatgtaatgctgcacttaggttcaagtcacccgcccgagagagagagagagagagagagagagagagagagagagagagagatgctgtgtgtgtgcaagcaagcactcgggctgtcaggaaccccatggggagggagagtgagcgtccccaaggatcacgtgctgttgctgttgcccatctgcaaagcaggatctgagttattgtttggtgaaattaatttggctgactcatcttaagtatttaattctaacgtgcgattgtagttgtctgtttgacttagaacatccctctcccccatgcgcgcgcacacacacacacaaaccttaatgcaagacatcctagcatgtgcaaaccaggtgatcttttgaatgttgtagctataatttgtatagtcagatagtaaggtggggtgggattgtgggaggtggagtttgttgtcttatcacagtccttggggatttataaactacctgattctctgcattgtgattcgtgcatttatgtcctgggatggatgctctggcatcctggcaccaaaagcagatggtttcacacttggattcctggtggaagaagaaaatgcctcagtatattttgtaacataaggagagtattttttgttaatattgaaaagttcagaattggatatgcttcgttcatccattctcagggctcaaatgttttgccactattcagaatgttgtatcaatagcaaacttgggctgtttttctttttctttcttccttctttttttgattgctgttagataaaagtacctgataactagtttgaatcatactgtgatttacccagagaccaagtccgaaaaatcaaaagtatgagttagacgcgcgatcaggagtgcgtttgtttgtgttgggggttgtccccaggttcgctggttgaaagactttgcattttagagaaaaagttgttctgccccctccctcgatgactccatgagcctcctccactggtgtagcaggaggaggaggaggagacagccagcgcccatgaggaggaagcagctgcacagatcctgtggctgcatgcgagctcggcgggcactgcactgttgggccgtcccctgtggcccttttgcaatcccaggcaggcagagtgagtgaggccctgtcctctgttgggttgtgtctgtgtggcacaggctgggcagtgctccggcactcacgcttaacccagaggggaggccatgcttgggcctcaccgcggttccgacttgagaacattctgggatgcctgcagcttgtcacacaattgcacatttgaactgttattatttttgtctgtgacattttcttttatctgtaaagttgaaagcatggcagagatttgttgactgaacacttaattatgctttttaaatgttttggttacgtttcttctttttttcgttcatattatgtgaaatgattaaatttagaataacctctaacactcctataattatcgtttaaaataccgatgtttttattttctcgacagtagtccgtcctcagaaagatgcagacaccctgtgtaattagcagggacttgaggctgcttcggttctgccgctcagttcccgtgtacagtcaccagcagccaccagacagtggctgagagcgtggagggagaccagtcaaaaacccacaaccacccgctttgctcgtggggcctgttgatttaaaactactccttgctcggtgaaggcacctagtcctcctgcacaaacttaactgctggcaatccgaggccttgcacctttatttcacagaccctgagctgagcctacagccgcatccttagccacctcgggctctgtgtgtctcctctgtgcttaacaacgcccaagaacccatagcttcccatctgctgattgcttctctggaatttaattatttctcaataaattctgtattttatattgtacgtgagacattttaaagatatgtttgagaccaaggatagttaaaatgactgtaaaggtagtgtgtctgccatggagacggagtgctgtccactggcagggaaaatgatcacctcaaactaatttgcagttattatttgactcattattttcttgtctgtctttctttgataaacaaccacagacagtttaaatgtcatacatggcctcagaatttgccttggctgctggttccatagcagaagcactgaggtgaagggaagaacatatctgccttttgtgctgtaaataaagggaaatgactaacggagtcaggctgagtgttctgccgacaagaaacggaatcacatcacactctgcagccttctaaagaaacctgtatccatgcacacagctatcactgcagagctgtgccagcacctatggaccacagttacctttagcttttccgttttgttttgtttttctttttctttttaataattgtagtcaataaagttattgtctgttca
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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