LOCUS       NM_028208               2064 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus protein prenyltransferase alpha subunit repeat
            containing 1 (Ptar1), mRNA.
ACCESSION   NM_028208 XM_001477013 XM_129160
VERSION     NM_028208.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Scavuzzo MA, Chmielowiec J, Yang D, Wamble K, Chaboub LS, Duraine
            L, Tepe B, Glasgow SM, Arenkiel BR, Brou C, Deneen B and Borowiak
            M.
  TITLE     Pancreatic Cell Fate Determination Relies on Notch Ligand
            Trafficking by NFIA
  JOURNAL   Cell Rep 25 (13), 3811-3827 (2018)
   PUBMED   30590051
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Klein AD, Ferreira NS, Ben-Dor S, Duan J, Hardy J, Cox TM, Merrill
            AH Jr and Futerman AH.
  TITLE     Identification of Modifier Genes in a Mouse Model of Gaucher
            Disease
  JOURNAL   Cell Rep 16 (10), 2546-2553 (2016)
   PUBMED   27568557
REFERENCE   3  (bases 1 to 2064)
  AUTHORS   Girard A, Sachidanandam R, Hannon GJ and Carmell MA.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132088.4 and AC134830.2.
            
            On or before Sep 18, 2009 this sequence version replaced
            XM_001477013.1, XM_129160.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR10223970.20435.1,
                                           SRR7345562.609700.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               AC132088.4         19067-19212         c
            147-316             AC132088.4         12122-12291         c
            317-383             AC132088.4         3468-3534           c
            384-488             AC132088.4         801-905             c
            489-702             AC134830.2         60001-60214
            703-992             AC134830.2         69060-69349
            993-2064            AC134830.2         71305-72376
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 18.45 cM"
     gene            1..2064
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /note="protein prenyltransferase alpha subunit repeat
                     containing 1"
                     /db_xref="GeneID:72351"
                     /db_xref="MGI:MGI:1921875"
     exon            1..146
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..1335
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /codon_start=1
                     /product="protein prenyltransferase alpha subunit
                     repeat-containing protein 1"
                     /protein_id="NP_082484.1"
                     /db_xref="CCDS:CCDS50405.1"
                     /db_xref="GeneID:72351"
                     /db_xref="MGI:MGI:1921875"
                     /translation="

MAESNEEVAVLVQRVVKDITNAFRRNPHIDEIGLIPCPEARYNRSPIVLVENKLGVESWCVKFLLPYVHNKLLLYRTRKQWLNKDELADVTCTLLLLNPDFTTAWNVRKELILSGTLSPIKDLHLGKLALTKFPKSPETWIHRRWVLQQLSQETFLPSSVAKGSLGAVPAERTQRIIQEEMEVCSEAAGRYPSNYNAWSHRIWVLQNVAKLDLKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTTIDSAVPQHNSLKSEPKDEAAAASTEEPSVNLPQLLEEEVEFCTDLIDSYPGHETLWCHRRHVFYLQHHLNGRLPPNLTHLSPADCPGGALNDSLQIPTSPQLSQAMEVDGLSDSSKQGYSQETKRLKRTPAPDSLGLEMEHRFIDQVLSTCRNVEQVRYANAYRKWLVTLSQ"

     misc_feature    325..>1005
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /note="farnesyltranstransferase; Region: PLN02789"
                     /db_xref="CDD:215423"
     exon            147..316
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            317..383
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            384..488
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            489..702
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            703..992
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            993..2064
                     /gene="Ptar1"
                     /gene_synonym="1700084D09Rik; 2010013L17Rik;
                     4930428J16Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggaactcccgccggcggctgggctctgccggaggcgcgcccgatcgcggcggccgccaacatggccgagtcgaacgaggaggtggcggtgctggtgcagagggtggtgaaggacatcaccaacgccttccgaaggaacccgcacatagatgaaattggcctgatcccatgccctgaagcaagatataaccggagtcccattgtcctggttgagaacaaacttggtgtggagagctggtgtgtcaagttcttattaccatatgtccacaacaagctccttttgtacagaacgagaaagcaatggctaaacaaagatgaactggctgacgtcacctgcaccctgctgcttctcaacccagacttcaccactgcatggaatgtcaggaaagagctcatcctctctggcactttaagtccaattaaggatctgcatctgggaaaactggccttaactaagtttcctaagagtccagagacatggattcacaggcgctgggtgctgcagcagttaagtcaggaaacgttcctgccctcctctgtggccaaaggaagcttaggtgcagttcctgcagagaggacacagcggataatacaggaagagatggaagtctgcagtgaagcagcagggagatatcccagcaactacaatgcctggtcccatcgcatctgggttttacagaacgtggccaagctggatctgaagatccttcttgatgaactgtcttctactaaacactgggcgtccatgcatgtctcagaccacagtggatttcactatcgccagttcttgctaaagtcattgattagccagactacgatagacagtgctgtaccgcagcacaactctttgaaaagtgagccaaaagatgaagcagcggcagcctcaacagaggagccaagtgtgaatcttccccagctcctagaagaagaggtggaattctgcacagatcttattgattcctatccaggacatgaaaccctttggtgtcacaggcggcacgttttctaccttcagcatcacttaaatggcaggctccctcccaacctgactcacctgtcacctgcagactgccctgggggcgctttgaatgactcgctccagattccaacaagccctcaactatctcaggcaatggaagtggacggactgagtgactctagcaagcaaggctattcccaggaaaccaagcgcctgaagcggaccccagctccagactccctaggcctggagatggagcacaggtttattgatcaagtattgtccacttgtcggaacgtagagcaagtcaggtatgccaatgcatacaggaaatggctggtgactctgagtcagtgaaaggggtggattcatcctaagaaattccctttagtgcaatattgcttttctttctcagtgccatagttgcatggactgactggctaactgtattcttcatctgtagcttaaaagtctataagaaaccttttgttttatttattttgttaagagccggcattcctttgggtatgagataatcgtatagttccttcctactaaatagagtcttaattctttttttttttttcctctttgacccatggctctctaggtccatccttgggcttctcatttgtctcttgagattggcttacatactttgctcacctctgttcagttgctacatagatagtttctttaaacattgaacatttattttgcagttcagcttaagaatattaatccacccgcagaagcacttggcgctgactgcagttctgagaacacaatggctacacgggtggatgggaggacgtcagccacttccctctcaagcgtgttctcccgttatccactcagaaccaaagccaggagggttggaatttatatagaaaaaaaaaataaattgcttccaatgtaatctattttttaaatgattatttaaaagaaactaaactaatttaagagtttatgtaattgtagtactgaaaaattatttttattactagttttgatagattgtttttacctcgcatttggtatatgccaaaacagcaagtcagcccttataaaataaattcttttttt

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