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Previous release (v1)
2024-05-17 15:34:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001411829 9971 bp mRNA linear ROD 08-NOV-2023
DEFINITION Mus musculus dicer 1, ribonuclease type III (Dicer1), transcript
variant 1, mRNA.
ACCESSION NM_001411829
VERSION NM_001411829.1
KEYWORDS RefSeq; RefSeq Select.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 9971)
AUTHORS Wang Y, Chen SY, Ta M, Senz J, Tao LV, Thornton S, Tamvada N, Yang
W, Moscovitz Y, Li E, Guo J, Shen C, Douglas JM, Ei-Naggar AM,
Kommoss FKF, Underhill TM, Singh N, Gilks CB, Morin GB and Huntsman
DG.
TITLE Biallelic Dicer1 Mutations in the Gynecologic Tract of Mice Drive
Lineage-Specific Development of DICER1 Syndrome-Associated Cancer
JOURNAL Cancer Res 83 (21), 3517-3528 (2023)
PUBMED 37494476
REMARK GeneRIF: Biallelic Dicer1 Mutations in the Gynecologic Tract of
Mice Drive Lineage-Specific Development of DICER1
Syndrome-Associated Cancer.
REFERENCE 2 (bases 1 to 9971)
AUTHORS Reyes-Castro RA, Chen SY, Seemann J, Kundu ST, Gibbons DL and Arur
S.
TITLE Phosphorylated nuclear DICER1 promotes open chromatin state and
lineage plasticity of AT2 tumor cells in lung adenocarcinomas
JOURNAL Sci Adv 9 (30), eadf6210 (2023)
PUBMED 37494452
REMARK GeneRIF: Phosphorylated nuclear DICER1 promotes open chromatin
state and lineage plasticity of AT2 tumor cells in lung
adenocarcinomas.
REFERENCE 3 (bases 1 to 9971)
AUTHORS Das O, Kundu J, Ghosh A, Gautam A, Ghosh S, Chakraborty M, Masid A,
Gauri SS, Mitra D, Dutta M, Mukherjee B, Sinha S and Bhaumik M.
TITLE AUF-1 knockdown in mice undermines gut microbial butyrate-driven
hypocholesterolemia through AUF-1-Dicer-1-mir-122 hierarchy
JOURNAL Front Cell Infect Microbiol 12, 1011386 (2022)
PUBMED 36601302
REMARK GeneRIF: AUF-1 knockdown in mice undermines gut microbial
butyrate-driven hypocholesterolemia through AUF-1-Dicer-1-mir-122
hierarchy.
Publication Status: Online-Only
REFERENCE 4 (bases 1 to 9971)
AUTHORS Roa J, Ruiz-Cruz M, Ruiz-Pino F, Onieva R, Vazquez MJ,
Sanchez-Tapia MJ, Ruiz-Rodriguez JM, Sobrino V, Barroso A, Heras V,
Velasco I, Perdices-Lopez C, Ohlsson C, Avendano MS, Prevot V,
Poutanen M, Pinilla L, Gaytan F and Tena-Sempere M.
TITLE Dicer ablation in Kiss1 neurons impairs puberty and fertility
preferentially in female mice
JOURNAL Nat Commun 13 (1), 4663 (2022)
PUBMED 35945211
REMARK GeneRIF: Dicer ablation in Kiss1 neurons impairs puberty and
fertility preferentially in female mice.
Publication Status: Online-Only
REFERENCE 5 (bases 1 to 9971)
AUTHORS Gao H, Jin Z, Bandyopadhyay G, Wang G, Zhang D, Rocha KCE, Liu X,
Zhao H, Kisseleva T, Brenner DA, Karin M and Ying W.
TITLE Aberrant iron distribution via hepatocyte-stellate cell axis drives
liver lipogenesis and fibrosis
JOURNAL Cell Metab 34 (8), 1201-1213 (2022)
PUBMED 35921818
REFERENCE 6 (bases 1 to 9971)
AUTHORS Bernstein E, Kim SY, Carmell MA, Murchison EP, Alcorn H, Li MZ,
Mills AA, Elledge SJ, Anderson KV and Hannon GJ.
TITLE Dicer is essential for mouse development
JOURNAL Nat Genet 35 (3), 215-217 (2003)
PUBMED 14528307
REMARK GeneRIF: role in lethality early in development
Erratum:[Nat Genet. 2003 Nov;35(3):287]
REFERENCE 7 (bases 1 to 9971)
AUTHORS Doi N, Zenno S, Ueda R, Ohki-Hamazaki H, Ui-Tei K and Saigo K.
TITLE Short-interfering-RNA-mediated gene silencing in mammalian cells
requires Dicer and eIF2C translation initiation factors
JOURNAL Curr Biol 13 (1), 41-46 (2003)
PUBMED 12526743
REFERENCE 8 (bases 1 to 9971)
AUTHORS Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng
EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC,
Babbitt PC and Ferrin TE.
TITLE BayGenomics: a resource of insertional mutations in mouse embryonic
stem cells
JOURNAL Nucleic Acids Res 31 (1), 278-281 (2003)
PUBMED 12520002
REFERENCE 9 (bases 1 to 9971)
AUTHORS Nicholson RH and Nicholson AW.
TITLE Molecular characterization of a mouse cDNA encoding Dicer, a
ribonuclease III ortholog involved in RNA interference
JOURNAL Mamm Genome 13 (2), 67-73 (2002)
PUBMED 11889553
REFERENCE 10 (bases 1 to 9971)
AUTHORS Araki K, Imaizumi T, Sekimoto T, Yoshinobu K, Yoshimuta J, Akizuki
M, Miura K, Araki M and Yamamura K.
TITLE Exchangeable gene trap using the Cre/mutated lox system
JOURNAL Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
PUBMED 10512203
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC124364.4 and AF430845.1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AF430845.1 [ECO:0000332]
RNAseq introns :: mixed sample support SAMN00849374,
SAMN00849375 [ECO:0006172]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on conservation, expression,
longest protein
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-325 AC124364.4 149768-150092 c
326-390 AF430845.1 215-279
391-513 AC124364.4 129820-129942 c
514-676 AC124364.4 129040-129202 c
677-807 AC124364.4 128153-128283 c
808-942 AC124364.4 127148-127282 c
943-1103 AC124364.4 126353-126513 c
1104-1272 AC124364.4 121922-122090 c
1273-1745 AC124364.4 119991-120463 c
1746-1878 AC124364.4 112794-112926 c
1879-2121 AC124364.4 111015-111257 c
2122-2276 AC124364.4 110201-110355 c
2277-2409 AC124364.4 108645-108777 c
2410-2485 AC124364.4 107805-107880 c
2486-2625 AC124364.4 106796-106935 c
2626-2805 AC124364.4 104873-105052 c
2806-3019 AC124364.4 104571-104784 c
3020-3173 AC124364.4 104233-104386 c
3174-3356 AC124364.4 103073-103255 c
3357-3462 AC124364.4 102739-102844 c
3463-3638 AC124364.4 102086-102261 c
3639-4419 AC124364.4 100422-101202 c
4420-4575 AC124364.4 98385-98540 c
4576-5446 AC124364.4 94294-95164 c
5447-5715 AC124364.4 92498-92766 c
5716-5878 AC124364.4 90323-90485 c
5879-5954 AC124364.4 90147-90222 c
5955-9971 AC124364.4 85762-89778 c
FEATURES Location/Qualifiers
source 1..9971
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="12"
/map="12 54.83 cM"
gene 1..9971
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="dicer 1, ribonuclease type III"
/db_xref="GeneID:192119"
/db_xref="MGI:MGI:2177178"
exon 1..325
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 326..513
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
misc_feature 367..369
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="upstream in-frame stop codon"
CDS 370..6120
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/EC_number="3.1.26.3"
/note="isoform 1 is encoded by transcript variant 1;
endoribonuclease Dicer; double-strand-specific
ribonuclease mDCR-1; Dicer1, Dcr-1 homolog"
/codon_start=1
/product="endoribonuclease Dicer isoform 1"
/protein_id="NP_001398758.1"
/db_xref="GeneID:192119"
/db_xref="MGI:MGI:2177178"
/translation="
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCESCPSCPRILGLTASILNGKCDPEELEEKIQKLERILRSDAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTLLRKIHALCEEYFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKPALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISSCNSSLAESDNYCKHSTTVVPEHAAHQGATRPSLENHDQMSVNCKRLPAESPAKLQSEVSTDLTAINGLSYNKNLANGSYDLVNRDFCQGNQLNYFKQEIPVQPTTSYPIQNLYNYENQPKPSNECPLLSNTYLDGNANTSTSDGSPAVSTMPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNSEKWEKDEMTKDCLLANGKLGEACEEEEDLTWRAPKEEAEDEDDFLEYDQEHIQFIDSMLMGSGAFVRKISLSPFSASDSAYEWKMPKKASLGSMPFASGLEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 493..1086
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="DEXH-box helicase domain of endoribonuclease Dicer;
Region: DEXHc_dicer; cd18034"
/db_xref="CDD:350792"
misc_feature order(493..504,511..513,562..585,706..708,895..897,
988..990)
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350792"
misc_feature order(670..675,742..747,820..822,826..831,838..840,
913..921)
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="nucleic acid binding site [nucleotide binding];
other site"
/db_xref="CDD:350792"
misc_feature 892..903
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="propagated from UniProtKB/Swiss-Prot (Q8R418.3);
Region: DECH box"
misc_feature 1135..2154
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="propagated from UniProtKB/Swiss-Prot (Q8R418.3);
Region: Required for interaction with PRKRA and TARBP2.
/evidence=ECO:0000250"
misc_feature 1180..1464
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Partner-binding domain of the endoribonuclease
Dicer; Region: Dicer_PBD; cd15903"
/db_xref="CDD:277191"
misc_feature order(1195..1200,1207..1209,1213..1218,1393..1398,
1405..1410,1417..1419,1426..1431,1438..1440)
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Trbp binding interface [polypeptide binding]; other
site"
/db_xref="CDD:277191"
misc_feature 1483..2061
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="C-terminal helicase domain of the endoribonuclease
Dicer; Region: SF2_C_dicer; cd18802"
/db_xref="CDD:350189"
misc_feature 1594..1668
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="propagated from UniProtKB/Swiss-Prot (Q8R418.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1606..1608
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site"
misc_feature 1612..1614
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site"
misc_feature order(1714..1722,1930..1932,1987..1989,1993..1995)
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:350189"
misc_feature order(1942..1944,1948..1950,2023..2025,2029..2031)
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350189"
misc_feature 2257..2523
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Dicer dimerization domain; Region: Dicer_dimer;
pfam03368"
/db_xref="CDD:427264"
misc_feature 2545..2604
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="propagated from UniProtKB/Swiss-Prot (Q8R418.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3025..3393
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="PAZ domain, dicer_like subfamily. Dicer is an RNAse
involved in cleaving dsRNA in the RNA interference
pathway. It generates dsRNAs which are approximately 20 bp
long (siRNAs), which in turn target hydrolysis of
homologous RNAs. PAZ domains are named...; Region:
PAZ_dicer_like; cd02843"
/db_xref="CDD:239209"
misc_feature order(3214..3216,3253..3255,3271..3273,3283..3285,
3337..3339,3361..3363,3367..3369)
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="nucleic acid-binding interface [nucleotide
binding]; other site"
/db_xref="CDD:239209"
misc_feature 3415..3417
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site"
misc_feature 3847..3849
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site"
misc_feature 4255..>4530
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Ribonuclease III family; Region: RIBOc; smart00535"
/db_xref="CDD:197778"
misc_feature order(4306..4311,4318..4323,4330..4332,4339..4344,
4351..4356,4360..4368,4396..4398)
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature 4735..4737
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site"
misc_feature 4759..4761
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site"
misc_feature 4765..4767
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site"
misc_feature 5161..5247
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="propagated from UniProtKB/Swiss-Prot (Q8R418.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 5347..6105
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="dsRNA-specific ribonuclease [Transcription];
Region: Rnc; COG0571"
/db_xref="CDD:223644"
misc_feature 5767..5769
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Important for activity.
/evidence=ECO:0000269|PubMed:18268334; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); other site"
misc_feature 5953..5955
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from
UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site"
exon 514..676
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 677..807
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 808..942
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 943..1103
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 1104..1272
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 1273..1745
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 1746..1878
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 1879..2121
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 2122..2276
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 2277..2409
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 2410..2485
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 2486..2625
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 2626..2805
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 2806..3019
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 3020..3173
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 3174..3356
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 3357..3462
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 3463..3638
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 3639..4419
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 4420..4575
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 4576..5446
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 5447..5715
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 5716..5878
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 5879..5954
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
exon 5955..9971
/gene="Dicer1"
/gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928"
/inference="alignment:Splign:2.1.0"
ORIGIN
gcggagcggcggcgcgacgccggtgggattctccaagccgctgtgcgccgtcgccgcgggccgagcgcgggctgcgggcgagcagggcgctgcgcagtctccgcaggcgcgggcgggaggggtcggggcgcggcgcggtgcggcgcgggcggctccgggcccaggtgaatggagtaacctgacagcgggaacgagacgacggcgagcggcaggaaatggcggcggcggcggcggcgccgggcggcaccgggaggcctgggctgtgacgcgcgcgccggagcggggtccgatggttctggaaggcccgcggcgcccagtgctgcagtaagctgtgctagaacaaaatgcaatgaaagaaacactggatgaatgaaaagccctgctttgcagcccctcagcatggcaggcctgcagctcatgacccctgcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataacatttatacgccaagaaaataccaggttgagctgctggaagcagctctggaccataacacaattgtgtgcttgaacactggctcagggaagacgttcatcgcggtcctgctcaccaaagagctggcccatcagatcaggggcgacctcaacccgcatgcaaaaaggaccgtgttcctcgtcaactctgcaaaccaggttgctcaacaagtgtcagccgtcagaactcactcggatctcaaggttggagagtactcagacctagaagtaaatgcatcttggacaaaagagagatggagccaagagtttactaagcaccaggttctcattatgacttgctatgtcgccttgactgttttgaaaaatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatcttgcgattctagaccacccctatcgtgaaattatgaagctctgtgagagttgtccatcatgccctcgaattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattggaagagaagattcagaaactggagcgaattctcaggagtgacgctgagacggcgactgacttggtggtcctggacagatacacttctcagccttgtgagattgtggtagactgtggaccgtttactgacagaagtgggctgtatgagagattgctgatggagttagaagcagcacttgattttatcaatgattgtaatgtagctgtacattcaaaggaaagagattctactttgatttccaaacaaatcctctcagactgccgtgcagtgttggttgttctgggaccctggtgtgcagataaagtagctgggatgatggtaagagaacttcagaagtacatcaaacatgagcaagaggagctacacaggaagttcctattgtttacagacaccttgttaaggaaaatacacgccctgtgtgaagagtacttctcacctgcctcacttgacctgaagtatgtaactcccaaagtcatgaaactgctcgagatcctgcgcaaatacaagccctatgagcgacagcagtttgaaagtgttgagtggtacaataacaggaatcaggataattacgtgtcctggagtgattccgaggatgacgatgatgacgaagaaattgaagaaaaagaaaagccagagacaaattttccttctccgtttaccaatattttatgtgggattatttttgtggaaagaagatacacagcagttgtcctaaacagattgataaaggaagctggcaaacaagatccagagctggcttatatcagcagcaactttataactggacacggcattggaaagaaccagcctcgcagcaaacagatggaggcggagttcagaaagcaggaggaggtacttaggaaatttcgagctcatgagaccaacctgctcattgcaacaagtgttgtagaagagggtgtggatattcccaagtgcaatttggtggttcgttttgatttgcctacagagtatcgatcatatgtccagtctaaaggacgggcacgagcgccgatctctaattacgtaatgttagcagatacagacaagataaagagctttgaagaagacctcaagacctacaaagctattgaaaagatcttaaggaacaagtgttcgaagtcagcggatggtgctgaggcggacgtccatgctggtgtagatgatgaggatgctttcccgccatatgtgctgaggcctgatgatgggggtcctcgagtcacaatcaacactgccattggacacatcaacagatattgtgctcgattaccaagtgatccgtttacgcatctagctcccaaatgtagaacccgagaattgcctgatggtacattttattcaactctttatcttccgattaactcacctcttcgagcctccattgttggtccaccgatggacagtgtacggttggctgaaagagtggtagctctcatttgctgtgaaaaactgcacaaaattggtgaactggatgaacacttgatgccagttgggaaagagactgttaaatatgaagaagagctggacttacatgacgaggaggagaccagtgttcccgggagaccagggtccacaaaacgacggcagtgctaccccaaagcaattccagagtgcttgagggagagttaccccaaacccgaccagccttgttacctgtatgtgataggaatggtcttaactacccccctccctgatgaactcaacttcaggcggcggaagctctacccacctgaggacaccacaagatgctttgggatcctgacagccaaacccatacctcagattcctcactttcctgtgtatacacgctctggagaggtcaccatatccatcgagctgaagaagtctggtttcacattgtctcaacaaatgctcgagctgattacaagattgcaccagtacatattctcacatattctccggcttgagaagcctgccctggagtttaaacctacaggcgcggagtcagcctactgtgttctacctcttaatgttgttaatgactccggcactttggacattgactttaaattcatggaggatattgagaagtcggaagctcggataggcattcctagcaccaagtattcaaaggaaacaccgtttgtctttaagttagaagattaccaagatgcagtgatcattccaagataccgcaattttgatcagcctcatcgattttatgtagctgatgtatatacggatcttaccccactcagtaaatttccttcccctgaatatgaaacttttgcagaatattataaaacaaagtataaccttgacctgaccaatctcaaccagccactgctggatgttgaccacacatcttccagactgaaccttttgacacctcggcatttgaatcagaaggggaaagcacttcctctaagcagtgctgagaagaggaaggccaaatgggaaagtctgcagaacaaacagatcctggttccggaactctgtgctatacatccaatcccagcatcactgtggagaaaagcggtttgtctccccagcatactgtatcgccttcactgccttctgactgcagaggaactaagagctcagacagccagcgatgctggtgtgggtgtcagatcacttcccgtggattttagataccctaacttagacttcgggtggaaaaaatctattgatagcaagtctttcatctcaagctgtaactcctcgttggctgagagtgataattactgtaagcacagcacaactgtagtccctgaacatgctgcacatcaaggtgctactagaccctccttagaaaaccatgaccaaatgtctgtgaactgcaaaaggttgcccgctgagtcacctgctaagctccaaagtgaggtttcaacggatcttacagcaattaatggtctttcttacaataaaaaccttgccaatggcagttatgatttagttaacagagacttttgccaaggaaatcagctgaattacttcaagcaggaaatacctgtacaaccaactacctcatatcccattcagaatttgtacaattatgagaaccagcccaagcccagcaatgaatgtcctctactgagtaatacgtaccttgatgggaacgctaacacatctacctcagatggaagccccgcggtgtccacgatgcctgccatgatgaatgctgttaaagcactcaaggacaggatggactctgagcagagcccttctgttgggtactcctcaaggactcttggccccaatccgggactgattctccaggctttgacactgtcaaatgccagtgatgggtttaacctggagcggcttgagatgcttggcgactcctttttaaagcatgctatcaccacatatctgttttgcacgtaccctgatgctcatgaaggccgcctttcatatatgagaagcaaaaaggtcagcaactgtaacctgtatcgccttggcaagaagaagggactgcccagccgcatggtggtgtcgatattcgatcctcctgtgaattggcttcctcctggttatgtggtaaaccaagacaaaagtaactcagagaagtgggaaaaggatgaaatgacaaaagactgcttgctggctaatggcaaactgggtgaggcctgtgaggaggaggaggacctgacgtggagggcccccaaggaggaggccgaggatgaggacgacttcctggagtatgaccaggagcatatccagtttatagacagcatgctcatgggctcgggcgccttcgtgaggaaaatctctctgtcgcccttctcagcctccgactctgcatacgaatggaagatgcccaagaaggcctccttgggcagtatgccgtttgcctcgggccttgaggattttgattacagctcttgggatgcgatgtgctatctggatcctagcaaagccgttgaagaggatgactttgtggtaggtttctggaatccatcagaagagaactgtggcgtcgacacagggaagcagtccatttcttacgacttgcacacggagcagtgcattgctgacaagagcatagcggactgtgtggaggccctgctgggctgctacttaaccagctgcggcgagagggctgctcagctcttcctctgttcgctggggctgaaggtgctcccagtaatcaaaaggaccagccgggagaaggccttggaccctgctcaggagaacggaagcagccaacaaaagagcctttcagggagctgtgcctctccagttggcccacgctcctctgcagggaaagacttggagtacggctgcctgaagatcccaccgaggtgcatgtttgaccatccagacgcagagaaaaccctcaaccacctgatatctgggtttgaaacttttgagaagaaaattaactatagattcaagaataaggcttatcttctgcaggcttttacacacgcctcctaccactacaacactatcactgattgttaccagcgcttagaattcctgggagatgcgattttggactacctcataaccaagcacctttatgaagacccacggcagcattctccaggggtcttgactgacttgcgctctgcccttgtcaataacaccatctttgcatcattggctgtgaagtatgactaccacaagtactttaaagctgtctctcctgagctctttcatgttattgatgactttgtgaagtttcagcttgagaagaacgaaatgcaaggaatggactctgagcttaggagatccgaggaggatgaggagaaagaagaggatatcgaagtccccaaggccatgggggacatttttgagtctcttgctggtgccatttatatggacagtgggatgtctctggaggtggtctggcaggtgtactatccgatgatgcagcctctaatagaaaagttttctgcaaatgtgcctcgttctccagtgagagaattgctcgagatggaaccagaaactgccaagtttagcccagcggagagaacttatgatggaaaggtcagagtcaccgtggaagtggtgggaaaggggaaatttaaaggtgttggccggagctacaggatcgccaagtctgctgcagcacgaagggccctccgcagcctcaaagctaaccagcctcaggttcctaacagctgaagcttccggactcacaggcggcaagacagcggaccagaaccacagctccacggcacaaggatggttcgggctgacacagaacaggaaaactgaaggcagaatttaaagtttgataatgagatagataacagaataaaacatgtaatatgtgtataaactctttggaactaattttggtttagtttttgcgcagacacaatcttgtcttctttacccaccctgctttgcttagtcacaggagtgctttaatcctggtgtttgttagcaaggttttaaaatcattttgacaggtttttggttttgtttgttttgacatttaatttctgtcgactttgcttggtgttagaggccatggagcttaacctctaacagtccctagaactgggtcgtcctgaccttgcggtcccttacactatacctgtcctgctgcggtgtcaagcccaacaaaaagggcagagtgtgcaaaggaagcccccgtgctgtggagggcagtggaggcggggccgggcggaccccgggtactattgcacggaatagtaagggacagattttgagtccgtgttggctgctggtgagtggaggccaggctttcagacgccacattgtgctgcagagaggattcttgccttaaaaggaaggacttgatagtttgcttttttattttgccttccccttattatgcattggatgaaatggggtggcagctcactagggcacttgcaatggaactattgcaggtaggatttctgttgtttgtactgaagacattctaaaacccagagtgagtatatagatttttaaagcatcattatagacaggatacatgactagatgcccggttttcctcagaacttcctgccaggtggtcccagtggcggaaatgcccggtcagctgctgttctgacgaaatgagcctgagatgcagtgtacctagacacgccacaggtctgtactaggcagtgttgccagagtcaccaaagctgtgctctctttcctatggggtcagcattgtggcagactgccaggaccaacccgtctggggtagaagtcaccagtttagataaactaggtcattagttcatctcagactcagaaagtaaagctgtttaggcatttgctgaaggtctcgcctgggcttgtgggcccctcttcacttacacacctcagtccctccctttgcctgcattttcccgttggtgctacgtttatgtatcatgcttgaagtttaattttttgcactgtgactataatacctcttaatttacatttaaaaatgctgtatgggttgcccgtgccctcccaccgacacacaggagagctttgctgcaatttgccctcttacgcttgaagtctcagcaggctgagccagggtagctcgcgttccccacacatctcctgaggctgatgcttcatgtaatgctgcacttaggttcaagtcacccgcccgagagagagagagagagagagagagagagagagagagagagagagatgctgtgtgtgtgcaagcaagcactcgggctgtcaggaaccccatggggagggagagtgagcgtccccaaggatcacgtgctgttgctgttgcccatctgcaaagcaggatctgagttattgtttggtgaaattaatttggctgactcatcttaagtatttaattctaacgtgcgattgtagttgtctgtttgacttagaacatccctctcccccatgcgcgcgcacacacacacacaaaccttaatgcaagacatcctagcatgtgcaaaccaggtgatcttttgaatgttgtagctataatttgtatagtcagatagtaaggtggggtgggattgtgggaggtggagtttgttgtcttatcacagtccttggggatttataaactacctgattctctgcattgtgattcgtgcatttatgtcctgggatggatgctctggcatcctggcaccaaaagcagatggtttcacacttggattcctggtggaagaagaaaatgcctcagtatattttgtaacataaggagagtattttttgttaatattgaaaagttcagaattggatatgcttcgttcatccattctcagggctcaaatgttttgccactattcagaatgttgtatcaatagcaaacttgggctgtttttctttttctttcttccttctttttttgattgctgttagataaaagtacctgataactagtttgaatcatactgtgatttacccagagaccaagtccgaaaaatcaaaagtatgagttagacgcgcgatcaggagtgcgtttgtttgtgttgggggttgtccccaggttcgctggttgaaagactttgcattttagagaaaaagttgttctgccccctccctcgatgactccatgagcctcctccactggtgtagcaggaggaggaggaggagacagccagcgcccatgaggaggaagcagctgcacagatcctgtggctgcatgcgagctcggcgggcactgcactgttgggccgtcccctgtggcccttttgcaatcccaggcaggcagagtgagtgaggccctgtcctctgttgggttgtgtctgtgtggcacaggctgggcagtgctccggcactcacgcttaacccagaggggaggccatgcttgggcctcaccgcggttccgacttgagaacattctgggatgcctgcagcttgtcacacaattgcacatttgaactgttattatttttgtctgtgacattttcttttatctgtaaagttgaaagcatggcagagatttgttgactgaacacttaattatgctttttaaatgttttggttacgtttcttctttttttcgttcatattatgtgaaatgattaaatttagaataacctctaacactcctataattatcgtttaaaataccgatgtttttattttctcgacagtagtccgtcctcagaaagatgcagacaccctgtgtaattagcagggacttgaggctgcttcggttctgccgctcagttcccgtgtacagtcaccagcagccaccagacagtggctgagagcgtggagggagaccagtcaaaaacccacaaccacccgctttgctcgtggggcctgttgatttaaaactactccttgctcggtgaaggcacctagtcctcctgcacaaacttaactgctggcaatccgaggccttgcacctttatttcacagaccctgagctgagcctacagccgcatccttagccacctcgggctctgtgtgtctcctctgtgcttaacaacgcccaagaacccatagcttcccatctgctgattgcttctctggaatttaattatttctcaataaattctgtattttatattgtacgtgagacattttaaagatatgtttgagaccaaggatagttaaaatgactgtaaaggtagtgtgtctgccatggagacggagtgctgtccactggcagggaaaatgatcacctcaaactaatttgcagttattatttgactcattattttcttgtctgtctttctttgataaacaaccacagacagtttaaatgtcatacatggcctcagaatttgccttggctgctggttccatagcagaagcactgaggtgaagggaagaacatatctgccttttgtgctgtaaataaagggaaatgactaacggagtcaggctgagtgttctgccgacaagaaacggaatcacatcacactctgcagccttctaaagaaacctgtatccatgcacacagctatcactgcagagctgtgccagcacctatggaccacagttacctttagcttttccgttttgttttgtttttctttttctttttaataattgtagtcaataaagttattgtctgttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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