2024-05-02 23:11:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001410199 1610 bp mRNA linear ROD 08-AUG-2023 DEFINITION Mus musculus cytochrome P450, family 2, subfamily c, polypeptide 38 (Cyp2c38), transcript variant 2, mRNA. ACCESSION NM_001410199 XM_017318054 VERSION NM_001410199.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1610) AUTHORS Meng XY, Zheng QC and Zhang HX. TITLE A comparative analysis of binding sites between mouse CYP2C38 and CYP2C39 based on homology modeling, molecular dynamics simulation and docking studies JOURNAL Biochim Biophys Acta 1794 (7), 1066-1072 (2009) PUBMED 19358898 REMARK GeneRIF: By comparison of active site architectures between CYP2C38 and CYP2C39, the possible reasons affecting their substrate binding were proposed REFERENCE 2 (bases 1 to 1610) AUTHORS Kasai F, Yoshihara M, Matsukuma S, O'Brien P and Ferguson-Smith MA. TITLE Emergence of complex rearrangements at translocation breakpoints in a transgenic mouse; implications for mechanisms involved in the formation of chromosome rearrangements JOURNAL Cytogenet Genome Res 119 (1-2), 83-90 (2007) PUBMED 18160786 REFERENCE 3 (bases 1 to 1610) AUTHORS Luo G, Zeldin DC, Blaisdell JA, Hodgson E and Goldstein JA. TITLE Cloning and expression of murine CYP2Cs and their ability to metabolize arachidonic acid JOURNAL Arch Biochem Biophys 357 (1), 45-57 (1998) PUBMED 9721182 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC139233.10. On Jul 29, 2022 this sequence version replaced XM_017318054.2. ##Evidence-Data-START## Transcript exon combination :: SRR5189682.101486.1, ERR2844020.1777906.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849386 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-189 AC139233.10 49463-49651 190-352 AC139233.10 51799-51961 353-513 AC139233.10 74164-74324 514-690 AC139233.10 76308-76484 691-832 AC139233.10 107736-107877 833-1020 AC139233.10 110745-110932 1021-1162 AC139233.10 120248-120389 1163-1610 AC139233.10 121426-121873 FEATURES Location/Qualifiers source 1..1610 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="19" /map="19 34.03 cM" gene 1..1610 /gene="Cyp2c38" /note="cytochrome P450, family 2, subfamily c, polypeptide 38" /db_xref="GeneID:13097" /db_xref="MGI:MGI:1306819" exon 1..189 /gene="Cyp2c38" /inference="alignment:Splign:2.1.0" misc_feature 4..6 /gene="Cyp2c38" /note="upstream in-frame stop codon" CDS 22..1344 /gene="Cyp2c38" /EC_number="1.14.14.1" /note="isoform 2 precursor is encoded by transcript variant 2; cytochrome P450 2C38; CYPIIC38; cytochrome P450, 2c38" /codon_start=1 /product="cytochrome P450 2C38 isoform 2 precursor" /protein_id="NP_001397128.1" /db_xref="GeneID:13097" /db_xref="MGI:MGI:1306819" /translation="
MDLVTFLVLTLSSLILLSLWRQRSRRGRLPPGPTPFPIIGNFLQIDVKNFNQSLTNFSKTYGPVFTLYLGSRPIVVLHGYEAVKEALIDHGEEFSGRENIPMSEKINNGLGSPCDPTFILSCAPCNVICSIIFQDRFDYKDKDFLMLMKKLNENVKILSSPWLQVCNNFPLLIDYCPGSHHKVLKNFKYIRSYLLEKVKEHQESLDVTNPRDFIDYFLIKQKQANHIEQAEYSLENLVCTINNLFAAGTETTSTTLRYALLLLMKYPDVTAKVQEEIDHVVGRHRSPCMQDRSRMPYTDAMIHEVQRFINLVPNNLPHAVTCDIKFRNYIIPKGTTVVTSLTSVLHDSKEFPNPEMFDPGHFLDANGNFKKSDYFMTFSAGKRVCAGEGLARMELFLILTTILQNFKLKSLVHPKDIDMIPFVNGLITLPPHYQLCFIPL"
sig_peptide 22..81 /gene="Cyp2c38" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 202..1326 /gene="Cyp2c38" /note="cytochrome P450 family 2, subfamily C, and similar cytochrome P450s; Region: CYP2C-like; cd20665" /db_xref="CDD:410758" misc_feature order(310..312,751..753,760..765,772..777,784..786, 937..939,952..957,964..969,973..975,1150..1158,1168..1170, 1174..1182,1192..1194,1201..1203) /gene="Cyp2c38" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:410758" misc_feature order(343..345,481..486,493..495,511..513,568..570, 580..582,589..591,745..750,757..762,769..774,955..957, 967..969,1297..1302) /gene="Cyp2c38" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:410758" exon 190..352 /gene="Cyp2c38" /inference="alignment:Splign:2.1.0" exon 353..513 /gene="Cyp2c38" /inference="alignment:Splign:2.1.0" exon 514..690 /gene="Cyp2c38" /inference="alignment:Splign:2.1.0" exon 691..832 /gene="Cyp2c38" /inference="alignment:Splign:2.1.0" exon 833..1020 /gene="Cyp2c38" /inference="alignment:Splign:2.1.0" exon 1021..1162 /gene="Cyp2c38" /inference="alignment:Splign:2.1.0" exon 1163..1610 /gene="Cyp2c38" /inference="alignment:Splign:2.1.0" ORIGIN
gtatgaataaggagggtttctatggatcttgtcacattcctggtgctcactctctcctctctcattctcctctcactatggagacagaggtctagaagagggaggctccctcctggccccactcctttcccgattattggtaatttccttcagattgatgtgaagaacttcaaccaatccttaaccaatttctcaaaaacctatggccccgttttcactctgtatttgggctcacggcccattgttgtattgcatgggtatgaagcagtgaaggaagctctgattgatcatggggaggagttttctggtagagaaaacatcccaatgtctgaaaagattaataatggccttggctcaccttgtgaccccacattcattctgagctgtgctccatgcaatgtcatctgctcaattatttttcaagatcgttttgattacaaggataaagattttcttatgctcatgaaaaaactaaatgagaatgtcaagattctgagctccccatggttgcaggtctgcaataatttccccttgctcattgactattgtccgggaagtcatcacaaagtactaaaaaacttcaaatatattagaagttacctgttggagaaagtaaaagaacaccaagaatcactggatgttacaaaccctcgtgactttatcgattatttcctgattaaacaaaaacaggcaaaccacatcgaacaagcagaatattcacttgaaaatctggtctgcactatcaataatctctttgctgcaggaacagagacaacaagcacaacactgagatatgctctcctactcctgatgaagtacccagatgtcacagctaaagtccaagaagagattgaccatgtggttggtagacaccgtagcccctgcatgcaggacaggagccgcatgccctatactgatgccatgattcatgaggtccagagattcatcaaccttgtccctaacaacctaccccatgcagtgacctgtgacattaaattcagaaactacatcatccccaagggaacaacagtagtaacgtcactgacatcagttctgcatgacagcaaggagttccccaacccagagatgtttgaccctggccactttctagacgctaatggaaactttaagaaaagtgactacttcatgactttctcagcaggaaaacgggtttgtgctggagagggcctggcccgcatggagctgtttctaatcctgaccaccattttacagaactttaaactgaaatctctggttcacccaaaagacattgatatgatcccatttgtgaatggattaatcactctgccaccccattaccagctctgcttcattcctctctaaagagatcacacattctgaaccctcctctgttgccttctgcaatcccccccccagggttttattcacctctttccttatcagggataaggcatcttccatcctggctcacagaacccccttttctgaagacctagcaaacacatgcggtttctggagttatagcacaaatgcacttgtattatctcttttatataacagttgtctgagcccttatgcttatgtttatccattcctgcgttagaataaaacttcactggcaaataata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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