2025-02-01 08:55:05, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS NM_001201395 1003 bp mRNA linear ROD 07-AUG-2023 DEFINITION Mus musculus claudin 34D (Cldn34d), mRNA. ACCESSION NM_001201395 XM_135954 VERSION NM_001201395.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1003) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 REFERENCE 2 (bases 1 to 1003) AUTHORS Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, Iyer V, Mujica AO, Thomas M, Harrow J, Cox T, Jackson D, Severin J, Biggs P, Fu J, Nefedov M, de Jong PJ, Stewart AF and Bradley A. TITLE A conditional knockout resource for the genome-wide study of mouse gene function JOURNAL Nature 474 (7351), 337-342 (2011) PUBMED 21677750 REMARK Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK015525.1 and AL691503.6. On Jan 18, 2011 this sequence version replaced XM_135954.4. ##Evidence-Data-START## Transcript exon combination :: AK015525.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-9 AK015525.1 2-10 10-10 AL691503.6 118551-118551 c 11-1003 AK015525.1 12-1004 FEATURES Location/Qualifiers source 1..1003 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 38.3 cM" gene 1..1003 /gene="Cldn34d" /gene_synonym="4930468A15Rik" /note="claudin 34D" /db_xref="GeneID:74987" /db_xref="MGI:MGI:1922237" exon 1..140 /gene="Cldn34d" /gene_synonym="4930468A15Rik" /inference="alignment:Splign:2.1.0" misc_feature 130..132 /gene="Cldn34d" /gene_synonym="4930468A15Rik" /note="upstream in-frame stop codon" exon 141..1003 /gene="Cldn34d" /gene_synonym="4930468A15Rik" /inference="alignment:Splign:2.1.0" CDS 169..801 /gene="Cldn34d" /gene_synonym="4930468A15Rik" /codon_start=1 /product="uncharacterized protein LOC74987" /protein_id="NP_001188324.1" /db_xref="CCDS:CCDS53117.1" /db_xref="GeneID:74987" /db_xref="MGI:MGI:1922237" /translation="
MARKHAKWQIGGFAAGAIAWFLCIVSMGLPQWRVWFFQDPMDSKHGMTLVGMWKTCIYHQESNSTFNRMCYKYTYQDDFIPLDIRVAQHLLLIASFLGIIATISVIIALWKLNSGRLRKKATFNPFRLPGILNIIASSFVFLSILYNYLSIIRKDGIAFPPSFHTPSFPDHQKIGTALAMATLSCFLFLVGGIIPLSFTLPPRSRVRYTI"
misc_feature 217..759 /gene="Cldn34d" /gene_synonym="4930468A15Rik" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN
accacacagttgactgtaaagtcactaaccaggcttgaaggacactagggaggttgtattctccttagcactacccgttgagatatctccaaattctgtcacataaggagccacaaatccacttggagatagcaacatagtttccaagagattactgtcaccgtgataatggccagaaagcatgccaaatggcagataggaggttttgctgcaggcgccatagcatggttcctttgtattgtctctatgggcctccctcaatggcgagtatggttctttcaagatcccatggattccaagcatggcatgaccttagtaggcatgtggaaaacctgcatttaccaccaggaaagcaattccacctttaaccggatgtgttacaaatacacctaccaggatgacttcatccctctggatattcgagttgcccaacatctgctactcatcgcaagctttcttggcattattgccacaatctctgtcatcattgctctttggaaattgaactcagggagactccggaagaaagctaccttcaatccattccgtcttccaggaattctgaacatcattgctagcagctttgtctttctttccatcttgtacaattacttatcgatcattcgcaaggatgggattgccttccccccgtctttccacacaccctccttcccagatcatcaaaaaattggcactgcactggcaatggcaactctatcctgtttcttatttctagtgggtggaataattcccctttctttcactcttcccccacgttcccgagtgcgctatactatttaaaagtaaatttgcaacttaaagacttgaaaatctaaaattaccaggagttatcgcaggccttcttcagatacatacttaaaatttccagattcaaaaccatgcccaatgatgacaagtggccatcctattatttcctgccttgtggtagcttcagtagttcaattggcttatggattttcattaaataaaatatttcccaatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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