GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-11-15 17:21:16, GGRNA : RefSeq release 226 (Sep, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Camellia sinensis uncharacterized LOC114289714 (LOC114289714), ncRNA. (1872 bp)
gatcaaattccctagcttctgggagtaaactcttccccaacttgatctcttgaatttctttcctcaacttcatctcccaaaatgttttccgatcctcactcaaatctgggtgcataagttcgaaattcgatttcttcatagcctcgttttgcttctccagttccgaaatctgattcgccagcccaatctcttcttgcgatgtctccatttgcttttcagatataaatctcttagtcgtagagacaagacagatagcttactcgcttcactacactaatggcctatgtcagcgttggtcctgctgctcaggttagggttgtagtgtagtgcagtgaagtgagtaagctatctgtcttgtctctacgactaggagatttatatctgaaaaacaaatggagatatcgcaagaagagattgggctggcaaatcagatttcagaactggagaagcaaaacgaggctatgaagaaatcgaatttcgaatttatgcgtccagatttgagtgaggattagaaaacattttgggagatgaagttgaggaaggaaattcaagagatgaagttggggaagagtttactcccagaagctagggaatttgatc...
position 920 1141
XR_003638702.1 - Camellia sinensis - NCBI
PREDICTED: Telopea speciosissima uncharacterized LOC122670138 (LOC122670138), ncRNA. (148 bp)
alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:122670138" ncRNA 1..148 /ncRNA_class="lncRNA" /gene="LOC122670138" /product="uncharacterized LOC122670138" /db_xref="GeneID:122670138" ORIGIN // tttctacaagagatggtgtgcgaaacagtttttaatggaaaggaagaacttagtcaatctcttcttgaaagcaagcgaggaagacaagctgaaggtattggaattgtatatgccagatactgaggacatcaatgaagactgatgaatg
position 55
XR_006334132.1 - Telopea speciosissima - NCBI
PREDICTED: Citrus sinensis protein STRICTOSIDINE SYNTHASE-LIKE 4-like (LOC102608831), mRNA. (1352 bp)
agtgatttcaagctcatggctccgaagagtttcctgctagcttgtttacttgcttttactctacaattcttcttctcgcctccagtatcatcttcagcttctcttctttccacctccaaggaaagctcctctatgaaggatttgattaaacttggagaaggatgtgtgagccacccagaggatgtttctgttgtggttagaaagggtgcgctgtatacagctactaatgatggttgggtcaagtatttcatcctccataatgaaaccttggttaattggaagcacatagacagtcaatctcttcttggactcacagcaacaaaggaaggtgacgtcattatatgcgacagtaaaaaaggtttgtttaaggttaccgaagaaggcgtaaaggttcttgatccagatgtaagatttgcaaatgatgtgatcgatgcatcagatggcacgttgtattttactgtctcaagcaccaaatatacccccgcagatttctacaaagacatggctgagggaaatccttacggccagttgctcaaatatgatcctaaatcgaaccaaacaacagttttgcaagagggattttactttgctaatggcatt...
position 323
XM_006485118.4 - Citrus sinensis (sweet orange) - NCBI
PREDICTED: Citrus clementina protein STRICTOSIDINE SYNTHASE-LIKE 4 (LOC18050416), mRNA. (1112 bp)
agtgatttcaagctcatggctccgaagagtttcctgctagcttgtttacttgcttttactctacaattcttcttctcgcctccagtatcatcttcagcttctcttctttccacctccaaggaaagctcctctatgaaggatttgattaaacttggagaaggatgtgtgagccacccagaggatgtttctgttgtggttagaaagggtgcgctgtatacagctactaatgatggttgggtcaagtatttcatcctccataatgaaaccttggttaattggaagcacatagacagtcaatctcttcttggactcacagcaacaaaggaaggtgacgtcattatatgcgacagtaaaaaaggtttgtttaaggttaccgaagaaggcgtaaaggttcttgatccagatgtaagatttgcaaatgatgtgatcgatgcatcagatggcacgttgtattttactgtctcaagcaccaaatatacccccgcagatttctacaaagacatggctgagggaaatccttacggccagttgctcaaatatgatcctaaatcgaaccaaacaacagttttgcaagagggattttactttgctaatggcatt...
position 298
XM_006445687.2 - Citrus x clementina - NCBI
PREDICTED: Rousettus aegyptiacus uncharacterized LOC107512815 (LOC107512815), transcript variant X2, ncRNA. (319 bp)
GeneID:107512815" ncRNA 1..319 /ncRNA_class="lncRNA" /gene="LOC107512815" /product="uncharacterized LOC107512815, transcript variant X2" /db_xref="GeneID:107512815" ORIGIN // cgtcagccggcgctgaactgtgacggcagcgctcacggacccgcggctcgtgacggcattattgggggcgaccatcgacctggatattttttctgcatatgaaaccccgactgacaatctcttcttgcgacgctcgacggtgaagcgccctgttcttccagcagccacggcctctcatgagaagctgctgtcatttaagtgacaacctgcttacagcaaaacgacgccagacgccgttggtttgtgaacggccctcaccacgcggtggacgacgccccgcagaccggcgcccaaaccctgggagcctgcgaagacctcg
position 115
XR_001597394.2 - Rousettus aegyptiacus (Egyptian rousette) - NCBI
PREDICTED: Camelus ferus uncharacterized LOC116657067 (LOC116657067), ncRNA. (330 bp)
gene="LOC116657067" /product="uncharacterized LOC116657067" /db_xref="GeneID:116657067" ORIGIN // accacatcacaaacaaaagtcctaataaaagtcgctgactaggactatcctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatgaaagagatgtatttgctcagggtctatcaatcttgttctgcctgttttctcaagtcagcagccttatctttacatttactccactcaatctcttcttgtcattttccctttctgtctgaaaataactacccccaagtctgcaaagcatcatctttgtattccatttcttgttgtaaagagtttgtgacattctgcgagatggacatgctagatcggaagagca
position 193
XR_004311999.1 - Camelus ferus (Wild Bactrian camel) - NCBI
Caenorhabditis elegans Protein clarinet (cla-1), partial mRNA. (25584 bp)
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
NM_001307220.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
PREDICTED: Telopea speciosissima uncharacterized LOC122662367 (LOC122662367), ncRNA. (304 bp)
product="uncharacterized LOC122662367" /db_xref="GeneID:122662367" ORIGIN // acagaacaaactcactcttactgaaaatcaagtttcgggggtgaatgtcttctcgcaaggtttctctggaaatcattttaaggggaaatcttctttccagaaacctgcttatagtttcctagagtccgtgctgccggggaaatcatcttcagcaaaaaccagttatttgcagggaagagagtggaaatgatatacgtggacatcttcaatctcttcttgtactaaatgtttctcaacaagagagacatgtgctgtaagcctgtaactgcgaagaattagatctcgaagggatctatttcgtttt
position 207
XR_006333008.1 - Telopea speciosissima - NCBI
Caenorhabditis elegans Protein clarinet (cla-1), partial mRNA. (27002 bp)
tccacggaaaatgaaattaccaatacgagtaatcaaacagcaaacatagtaattgatccaggaagtattgattcagaagaaataaacaaattagccgcaaaattagttgaagaatcaattctcaaagcatcacaggaagcagcatcagataaccacgagaaagaaagatcaagtgcaacatcaaaagctgattatgaaagatcatttgatcaagacgtcacttatgaaagatcttcaccgttgcttgaaccaagtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcacattgcaaggatccagagtcttgcagaacaatcatcattcgaacaagcttcaacgattcctgatcgaccacctcttccagcccggcttccgactgtagacgagccgattgtcatctcagaacaacacgaagaagacagatcaagtgcaacatcgggagctgactatgaaagatccttcgatcaagaagtcacgtatgaaagatcttcaccgttgcttgaaccatgtgaagaaccagtgatggaatccaaagaaccagaactgacacaagaagagattgatcatattgca...
position 1741
NM_001307219.4 - Caenorhabditis elegans - NCBI - UCSC - WormBase
PREDICTED: Podarcis raffonei uncharacterized LOC128424167 (LOC128424167), ncRNA. (394 bp)
experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:128424167" ORIGIN // ggtggggagagaaggagactctcctgagggcaacagtgagagaagggaacttgccagtggcccatctagtcctggatcctgttctcacagtggccaacaggcatcaatttacacttatttacattgtttatgttgaattgcacttgccattttattacccattcactcaggttggagagcttgttttcacaatctcttcttgtttgaatgaccctgaacaatttagcatcatcggcaaacttcactgctcacccctaattctcaattgtttttgaacaagttaaatagcagaggtctcagtgttgatctttttaaaataaaaaataaaataaggtgttgttaaagttttttcataatacaataagataaaagaaactaaataaaaacaaaaaca
position 190
XR_008332942.1 - Podarcis raffonei (Aeolian wall lizard) - NCBI
PREDICTED: Rousettus aegyptiacus uncharacterized LOC107512815 (LOC107512815), transcript variant X1, ncRNA. (409 bp)
GeneID:107512815" ncRNA 1..409 /ncRNA_class="lncRNA" /gene="LOC107512815" /product="uncharacterized LOC107512815, transcript variant X1" /db_xref="GeneID:107512815" ORIGIN // cgtcagccggcgctgaactgtgacggcagcgctcacggacccgcggctcgtgacggcattattgggggcgaccatcgacctggatattttttctgcatatgaaaccccgactgacaatctcttcttgcgacgctcgacggtgaagcgccctgttcttccagcagccacggcctctcatgagaagctgctgtcatttaagtgacaacctgcttacaggaaacctctccatgaaagaagaagaaaacaggtttttatcgaataagcagtaaaccagaacgtgacgtgcatccaggcaatccagtgggacatctcacctggacagagccagactggtgcgacctgtcacacacacgttctcgggatgagcaccagcttgtcttcaggtaagaggacttgacggcaccattta
position 115
XR_001597393.2 - Rousettus aegyptiacus (Egyptian rousette) - NCBI
PREDICTED: Lontra canadensis late cornified envelope protein 1A-like (LOC116858788), mRNA. (414 bp)
ORIGIN // atggggcccaaggtccaaaacaggagctatgaggccttccaggtggcacttgccaaagagaatgaggcagaaaatcaaacttccgactccatcagcgagatgtcctaccagcagaatcagcagcagtgccagtcccctcccaagtgtcccaccccgaagtgccctccaaagtgtcccccaaagtgcccctcaatctcttcttgctgcagtgtcagctctgggggctgctgcagctccagctccgggggtagaagctgctgcagttttggaggtggcagctcctgcctgagccaccacagacgacacaggtcccactgtcacagatgccagagctctggctgctgcagccagccctcagggggctccagctgctgtggagggggcagcagtcagtcctctggaggctgttgctga
position 191
XM_032843692.1 - Lontra canadensis (Northern American river otter) - NCBI
PREDICTED: Cygnus olor uncharacterized LOC121066939 (LOC121066939), ncRNA. (369 bp)
LOC121066939" /db_xref="GeneID:121066939" ORIGIN // agacacacctgatgatttattattttcagtagcttatttgtgaatatgaaaaaatgtctttcttgatattcaccaaatgatataaatgcctttactctccagctcttcattttttctgctcactggtgctttgaatgcagtggaaaggcatttctggtctccatggcttctcttaaatgcacgcagagaagggaacataatagagatgatgagccctagcaaattagccaactgcaatctcttcttgttcagttaacgcgcctgtacagccagataccagccacgggagcaaagggctgtgagaggagatttggagcccaagtataggagtagagaagctctcagctgtttgtagcatgtctagaagca
position 235
XR_005818030.1 - Cygnus olor (mute swan) - NCBI
PREDICTED: Beta vulgaris subsp. vulgaris uncharacterized mitochondrial protein AtMg00310-like (LOC130591735), mRNA. (381 bp)
ORIGIN // atgaaagaagctgcaagggtggaaagagaaattgctatccaccccgggaaagaggtgcttattaaattagtggcgcaagctattcccacgtatatgatgagtgtattcagccttcctagcggattgattgatgagattcattcgttgctggctcgattttggtgggggtcctctgacactgataggaagatgcattggcatagttgggatacgttgtgctaccccaaatcgatgggcggtcttggctttagggacctacactgcttcaaccaatctcttcttgcaaagcaagcatggcggttatgtacgggggaccagactcttctttatcggctgctgcaagcacgatactttaagtcttcggaatttctggaggcgtga
position 271
XM_057395547.1 - Beta vulgaris subsp. vulgaris - NCBI
Laccaria bicolor S238N-H82 uncharacterized protein (LACBIDRAFT_325715), partial mRNA. (411 bp)
Wuyts,J., Martin,F. and Grigoriev,I.V. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (19-NOV-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA atgtactctcggtctccatggcctgttgcatctcctgctgcaccactctcaagtggtaatcaatctcttcttgtcattcacggcgaacttcctcttgcctctgttctcaagtatttggatgagaattgtgtcgatgagaccaacattgtcgatggtgacacagacgtcgtcaatggtgacgcagacgtcgtcaatggtgacgcagatgtcgtcaatggtgacacagacgtcgacggtgatgtagacgtcgtcggtgttgacacagatggtggcacagacgtcgtcgatgatgacacaaatggtggcacagacgttgttgatggtggcacagacactgttggaggtgacacagacgtcgaggttgagc...
position 61
XM_001879458.1 - Laccaria bicolor S238N-H82 - NCBI
Penicillium citrinum uncharacterized protein (N7469_005960), partial mRNA. (414 bp)
Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgccttatgtagctgctacaattaaagaggctatgggatggagggcagttgttccgttggcttttccgcatgctactactcaagcgtctgtgactgacgttaatctccgtgatcagtacggttatggacccggtcgtcggattcgtcctgggatgcatcttgctgaacgcaatctcttcttggctatcgcgaaaatgagttgggtatttgatgtcggtactggtaatggtgaaaagacaaggttgcctattgaaccggatgttgatcatcagacgggatattgggagggcttgatcttgggtgctcggccattcccttgtcagatgtctgtgaggtctgaggcgagaagagatgccattgtgcgggaatttcagaagatgaattctgatatgttttcgagattcgcattttga
position 171
XM_056644879.1 - Penicillium citrinum - NCBI
Penicillium angulare uncharacterized protein (N7478_008204), partial mRNA. (438 bp)
JOURNAL Submitted (13-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgcgcgccgctttgacgtgcagttgttcccatggattctatatggagaggaaaattgtgtacagcgttggtttgggatttatgattttcagcaaagtcagtctcaaaaagactgataggctcgtccttgacacggagattatcaatctcttcttgatcaatctcatcaccactgccaccatcgaagctctcagggatatggtagacaacgtcctcagagaagttgtaactcgcagaagtgtcattctcgcacgcaaaatcgtcaatgttgccaaaaacaacatcctcgttctcataatcaatgtccgattcagagacccccggggcctgctcaagaacgaattctggatcctcggggacggctgccttcttttgctgtggatgggatttcggttgagcagcagcagcagcagcagcagaagatggagcagactgtaa
position 144
XM_056924418.1 - Penicillium angulare - NCBI
PREDICTED: Saccostrea cucullata uncharacterized LOC134258183 (LOC134258183), partial mRNA. (440 bp)
protein LOC134258183" /protein_id="XP_062596710.1" /db_xref="GeneID:134258183" /translation="MMQSLLVFVISVASIKTLHGSNGVMYPSSLSTLNEVPNCPRNQHDWEKAAARKDCNQISKSDNKPFVYHCLINEWANATVEVCAPTWFVSGFCAMYSSSDARVIDNFNYDCTHYTPPCPQRYISSEAYKYGVCYDI" ORIGIN // tccattaacacaaagtcttggtaaaaaagtaaatgatgcaatctcttcttgtatttgtcatatcagttgcatcaataaaaacactgcatggaagcaatggagttatgtatccatcgtcattgtcaacgcttaatgaagttcccaattgtcctagaaatcaacatgattgggaaaaagctgcagccagaaaggattgcaaccaaattagtaaaagtgacaacaagccctttgtttatcactgtttaataaatgaatgggcaaatgctacagttgaagtatgtgctccaacatggtttgtctcaggattctgtgcaatgtacagttcttccgatgcaagagttattgacaactttaactac...
position 39
XM_062740726.1 - Saccostrea cucullata (small rock oyster) - NCBI
PREDICTED: Acropora digitifera uncharacterized LOC107337268 (LOC107337268), ncRNA. (444 bp)
including 41 samples with support for all annotated introns" /db_xref="GeneID:107337268" ncRNA 1..444 /ncRNA_class="lncRNA" /gene="LOC107337268" /product="uncharacterized LOC107337268" /db_xref="GeneID:107337268" ORIGIN // cagaatgggtgttcctcttgtggttttgcttgaattctgttctgagggtgataacgtcttgatgccgtcaatctcttcttgtctgctaatgagtggctcaaatttgttcccacgaaagaggtggaaaatccgttctttggacaaacaagtaattttgggattccagcatcttggtctttaatgtttggatcaccaatgcattggcatggaaacctattttagtgaggcagactcatgagttatgtacttaccataactttcacgtttgtttgatcactgttttgcgcttagtttagcaaggaacctctccatgttacgggtcattatttgtagtatttgctcaaaacgttaccatgaaacagctaccacgtgtcaaa...
position 69
XR_001562778.1 - Acropora digitifera - NCBI
PREDICTED: Ahaetulla prasina mucin-2-like (LOC131184643), transcript variant X4, mRNA. (456 bp)
gcggcggctgctgctgctgctgcttctcccaggggcgctgctgagcttcctcccgcaggcgaccccgcacccgagtgtgacacaccgttacgaaaatgttaaagcagtggagatatctgtgcagccaactgcagttgaagaggttatatcgggagggaaagatgctgttgaagtccagcatcaatctaaaaagaagaaaaatgacattatagagttgaaagagaccttggaggtcttctagtccaaatccctgctcaagcaggagatcctatccattctggacaaattactatccaatctcttcttgaaaagttccaa
position 433
XM_058156240.1 - Ahaetulla prasina - NCBI
Trematosphaeria pertusa uncharacterized protein (BU26DRAFT_500137), partial mRNA. (528 bp)
CA 94598-1698, USA atgaccgacaccgcggactttgagcaattttgcttaactacactctacaatgctattccgatgctcgacaaccccagcgaccggtacgagtggaataatagggtgtgcgattttattgagatttcctctgtcgccgaagatggtgctcctccaccaaacaaagatcaggcaaaggaatggtatcgccgacagaaactctacacagccatgatcatgaagaagctgtcgcacaacgctgcgccgcgaattaaggccttagggatcagtgacgtgcaatctcttcttgaagctgtgcgagagcgcttcaactttagccgcctcaaggacgaggcaatcgaggaagagtaccgatccggccagcggggcaatgagccggcgaaggcgcagcgtgttagcaaccagattcaaactcttacccgccagatattgatatcaccggacgaaaccagatgccagattcacatagacaaggttccgttttgctcattttgtcccaccaaactcgcacagcaacccagaaacatttag
position 274
XM_033826478.1 - Trematosphaeria pertusa - NCBI
Arabidopsis thaliana uncharacterized protein (AT2G18970), mRNA. (531 bp)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA tccaatctcactcaaaatctcctccatgttcatctcttctccacctggcaaaagcttctgcaattccttcaatctcttcttgatctctcctccttcttcttcttcgtcgctgtcttggtgtttttctccaccttgtctcttgctcgatctttctagaatctcggaaggagaactactagtgctaattggatcatcataaggggaagataatagcttctgttgcaagaaacggctccacgcgaattcttgagcagacaatgcgaaagccatgtctacttcatgtttcacgggttcttgtttggttggagagaaaagactcgctttctcttgtttataatttgcctctccatgtgaaatttgtttgcttcgtcggaactct...
position 70
Synonym: F19F24.17; F19F24_17
NM_127454.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
PREDICTED: Arabidopsis lyrata subsp. lyrata ubiquitin-conjugating enzyme E2 36-like (LOC110230388), mRNA. (391 bp)
gtgattttagacattgggaaatggtggaatcatatgagcagcatggtgatgaaaatgatgggcatgttccatatgtaccttctggtgacagaattatggaggatatgcgggattctatcactacagagatggctgaaggaacgagacttccatattaacagctcccggtatttcaatgttatgattcttggacctacacaatcaccttatgaaggagttgggtttgaatcgagaagcaaatacttgtttggtaaagtctctatctagattaagcaaatcgaggaacaaaaccaatctcttcttgctctgttttaagacactgctttgattattatgtccctaatcttacattatgaatgtatttcactaaagcagtgacattggttggttt
position 292
XM_021033133.1 - Arabidopsis lyrata subsp. lyrata - NCBI
Caenorhabditis elegans Protein suex-1 (suex-1), mRNA. (413 bp)
org REFERENCE 4 (bases 1 to 413) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA aaatgcaatctcttcttgtattctgtcttgccacaattattctatcaaacttcacagaggcttctgcagatttggagacagcttcacaaagtctgaagcatccgaggaatttgggatggaaggctcctgaaggacatcgcgaaaaacgatatggtggatggggaggtggatatccctacggcggctacggtggatatggtggaggttacggtggcggatatggaggcggatacggaggagggtatggcggacgatatggcggaaactatggaagcagctcatggggatcatattcgagttatagttctggtggatacag...
position 6
NM_062648.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase
PREDICTED: Manis pentadactyla uncharacterized LOC118908090 (LOC118908090), ncRNA. (484 bp)
ggcctcttatccacgtctgcagaaaaatcactcacgggatttgacatctgctgcacaccatggagaagacaccttattgatgaaaaagaacacagttcctgaggattgctctgggatggggaaaacttgatcatcttctgccccttgtgctcacagaaactgtttgaggtctgtctcctggggaccccaccctccatttttaggactgaatacctgaagtacagttgtcatcctgttgaatcttatgttacctgcattttatgtcttcaacttctctggttttgtttaagcaaacaatctcttcttgagaagggacagaagggaaataaaattctagatacccaatgtgtccaaaaa
position 422
XR_008998512.1 - Manis pentadactyla (Chinese pangolin) - NCBI
PREDICTED: Haliotis rubra biogenesis of lysosome-related organelles complex 1 subunit 3-like (LOC124274838), transcript variant X2, mRNA. (1880 bp)
aatcttcagttccacagtcacctggtgagtctggggagccacgcctacatgtctgctgccaagcacatcaacaacaccacacagcagctgctcaagtcacatgttgctatccaggacgtgtctcacaacatgaggctgatgaccaacgacctgttccgcctggaggacaagatcaacattatctcctcctgtagcctgttacctgacatcaacatagaactgtcgtcatagcaacaccatctcctcctatgacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacaccatctcttcttgtaacctgttgcttgacatcaacgcagaactgtcatcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaagaccatctcctcctgtta...
position 649
XM_046710202.1 - Haliotis rubra (blacklip abalone) - NCBI
PREDICTED: Haliotis rubra biogenesis of lysosome-related organelles complex 1 subunit 3-like (LOC124274838), transcript variant X1, mRNA. (1893 bp)
aatcttcagttccacagtcacctggtgagtctggggagccacgcctacatgtctgctgccaagcacatcaacaacaccacacagcagctgctcaagtcacatgttgctatccaggacgtgtctcacaacatgaggctgatgaccaacgacctgttccgcctggaggacaagatcaacattatctcctcctgtagcctgttacctgacatcaacatagaactgtcgtcatagcaacaccatctcctcctatgacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacaccatctcttcttgtaacctgttgcttgacatcaacgcagaactgtcatcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaagaccatctcctcctgtta...
position 662
XM_046710201.1 - Haliotis rubra (blacklip abalone) - NCBI
PREDICTED: Herrania umbratica uncharacterized LOC110427542 (LOC110427542), mRNA. (417 bp)
misc_feature 144 /gene="LOC110427542" /note="gag-polypeptide of LTR copia-type; Region: Retrotran_gag_2; pfam14223" /db_xref="CDD:464108" ORIGIN // atggcagaatgcagttctattagaccccatgtgctgaagatgattgaactcatcgagagacttggacaattgggattagcaatggatcatgagcttagtatagacttagttctacaatctcttcttgacagctttagtcagttcatgttgaacttccatatgaatcgattggaagccacttttcttgaacttttgaatatgctaaacatggtagagtggtccatcaggaaagataaaggatcattgcttcttgtttcttcttttgaggctcatacgaaacaacagaagaagaaagcccaaaaagggaagaaggtaaaatctcaaaatgagaaggtgctgaagcctaagagaggtgtcaaaaaggacaaagagaaagatattttgccatcattgtggcaaacttgggcattggaatag
position 115
XM_021443097.1 - Herrania umbratica - NCBI
PREDICTED: Drosophila subpulchrella uncharacterized LOC119551309 (LOC119551309), mRNA. (513 bp)
tgcatagagctgaagtgcttctgcatcctgatagccatcgtggaggtgctcatccgcgggttggatcgtttttttgtggatcgcgacagcatcctgggatttttgtccctcgtggtgagcggtatctacgtaatctgctgcatattccttcttcttggagccgtgctgggggtaaggtactttctgttgccctacctctcggtttcctgcctccgcttccttattttggttgccgagggcgtgtttgtggccacggaaggcttcgtcaatgaatatcttgtcttcgatgttctccaatctcttcttggtctatacttttggctggtggtcttctcctactacgatctgttgaaggacacctgagtttatatatttgtgcttacttttatattgtaaaaaatacttgtttagatctgagt
position 389
XM_037860603.1 - Drosophila subpulchrella - NCBI
PREDICTED: Fukomys damarensis uncharacterized LOC104847975 (LOC104847975), ncRNA. (576 bp)
RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:104847975" ncRNA 1..576 /ncRNA_class="lncRNA" /gene="LOC104847975" /product="uncharacterized LOC104847975" /db_xref="GeneID:104847975" ORIGIN // ctggtgaatggaggctgacttcttgctctccaagaactgcaagtagctacccaatctcttcttgaaatcagcagtctgtgagctcactgtagtggggcagccagaaccttaaagcctaacaatgggacagtgacaagaagagaggtggagagaaactttcacagtccccctcttccactccaagagaagaaacacacggctttattatggtaccaagtccacctccagatagaagcaatacatctcctcttgaacaagactgtttctccagtttaagcaaatctatccaaactacctccaagctgcagtgaatcatacggtggctgaaggaactacactaagaaggacttgaaagactt...
position 52
XR_776269.2 - Fukomys damarensis (Damara mole-rat) - NCBI
Kwoniella europaea PYCC6329 uncharacterized protein (V865_001725), partial mRNA. (447 bp)
cagcgagtggcgaacaatctcatgccacccataatactcaaagtcaaaatacgactggtcaatccaattcgaccgatccacctcggagctcacctactctggaacgtaccctctctgaggcgactactgtcgtggatgtaggtgccggtcaatctcatatcgacctacccagcttcacggtccgaacaactggtcaatcctgctgcgaaacccattcaggcgagattgcgaaatgtatgtgttatagcgttacgtgcgtttgtggggcgggtttggcgattggtacagtggcggcaatctcttcttgctgtaatggatgccctcccttctaa
position 410
XM_066225539.1 - Kwoniella europaea PYCC6329 - NCBI
Penicillium crustosum uncharacterized protein (N7487_009046), partial mRNA. (531 bp)
JOURNAL Submitted (30-NOV-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgcaggatatctacactaagatggatacaatggtagcggtgattctaacagacgtaaactttatgacaaacacaccgataattaccgatcaagcggacgagcaggaggtctatgagggatactcaaattttgtacaatctcttcttgagctcatggacgccgtatcgagcagcgcagcccagctgaaatcgatcaacgaaacaaccaagaataacgttccctttggaattcgcatcttgcaaactgccgttgacgtgagttccctaattaactcttcgctaccacctgaggagatgatcgatgagatgctgacaccttacaaggcctacttctacaacatcatcggtctcttcccagccaacagcgcatacaacgcccaggccaacaaccagaaggctcaggtggatacgcattgcttccaggccgtctgggcatttgatcgcaggtat...
position 136
XM_056876776.1 - Penicillium crustosum - NCBI
Penicillium brevicompactum uncharacterized protein (N7506_009931), partial mRNA. (537 bp)
Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atggcagcctcgttgtcttcgtcggttacatcgctgcagtcatcgctgcagctgctggataattcaataaccaccctcgactcgggcgtgagcgactttcctcgcctttgtaaggtcctttctacaacgcgacattttgagctactaccagagccaacactgcgtgaggcacaacaatctcttcttgatgagatcacccccagcatcgcccatcttctcacactatcatcaaaccacgtcgaaaagctcgcacgccgtgaggaaagcttaaaagcaaaatgcgatcttcaagaaggaagactctcatctaatgcagagagccgcccatctgctcctcgcagtcaaccccagagcagcgcattgcggggtcgcatggcggggtctagcgctggctcatcgggcagcgcagcagccaaagccgcagaatacaagagactcgtacagaagaaagagcgactcaagtttgcggttgaccgattgga...
position 175
XM_056959224.1 - Penicillium brevicompactum - NCBI
Aspergillus piperis CBS 112811 hypothetical protein (BO85DRAFT_383017), partial mRNA. (453 bp)
gtcttaaagctcatcgaatccaccaccatggatttccgcaacctatcattcactctcctcctgctatccactacagtcatgttatatttcagggctctattagcgcatcccatccacattattagcacccctgaatcagtgcagactgcagaaccagcgccaaccgacgccctcgccttcctcgacgagcccgtcttcaaaccactggcatctcacatagcagaccacccatatccatggcgtgataaacgtccattccaggagaccaattatgcgttactcatgggtgcagttcaatctcttcttgaggctgaggttgacgaggaagagggtggtgtgggtttgaacgagggtcatgggcaacaggacgtcgttgagattaactcgtctgagacatacattctctgggttggggataaggatgatgagaagtgttcttgcgcttag
position 301
XM_025656494.1 - Aspergillus piperis CBS 112811 - NCBI
Brettanomyces bruxellensis uncharacterized protein (BRETT_000934), partial mRNA. (543 bp)
Research, Australian Wine Research Institute, Corner of Hartley Grove and Paratoo Road, Urrbrae, SA 5064, Australia atggttgcataccaatttagttccgtttgtgagaattgtgaactaaatgtgaacatgagtgactcagataaaacagacaagaaatttccacgctcttctctttccagaacaactacaacgactagcataactacccctgttcacccaatggaattggttgtacaatctcttcttgaatcacctcttgagcttctaaatttgagtattcattcattgtatgaatcgcaaatgattctcacaacaatattagatcgaatgcagcggaaacttgacaaatgtcttaggggcattggtaaaagtaggcaagaaccaattactactgacacagatacgcaaaatttacaatatccaaacgagcatcgaaatagggcaaactcagatgatgatctgacaacacagccaggaccagacaaaagcttgacaattgaagaatatgctgccagaattcatacgatcaagctccgcattgtaaaa...
position 163
XM_041279492.1 - Brettanomyces bruxellensis - NCBI
Meira miltonrushii Isochorismatase hydrolase (FA14DRAFT_152158), partial mRNA. (618 bp)
caaaacttttgaggggcgctcaaatcttggagatcccagttttcacaactgaacaaaactcgaaagctcttggatcgacggtagacgttctcaagaaagatatcccagaaaattccacaatcgttgacaagacccgattcagtatggtattggacgatggaacaacagataaatggctacgcgatcacaaagttcaaaatgtgatgattgtcggaattgagagtcacgtatgcgtcttacaaacgacattggacttgctcaagaaaggcttcaacgttttcatcattcgtgatgcaatctcttcttgtaataaacaagaagttccacttgccatcgaaagaatgcgtttggctggcgctacaatcacaacatccgaaagcgctctgtttgaactgatgctagattcaaaacatccccatttcaaagctatcagtgggctaatcaagacggaaaaggacagtacaaaagccgctcttgaagcactcacatcacgtatttga
position 413
XM_025497511.1 - Meira miltonrushii - NCBI
PREDICTED: Pantherophis guttatus uncharacterized LOC132711909 (LOC132711909), ncRNA. (112 bp)
using gene prediction method: Gnomon." /db_xref="GeneID:132711909" ncRNA 1..112 /ncRNA_class="lncRNA" /gene="LOC132711909" /product="uncharacterized LOC132711909" /db_xref="GeneID:132711909" ORIGIN // caactctaatggctctccagtacacatctggaactgctggatggcctcgtggtgagacctcttatacccagggggaggagtcagaggcaagaagagattgcaccaatgaggg
position 88
XR_009622629.1 - Pantherophis guttatus - NCBI
Rhizopus delemar RA 99-880 uncharacterized protein (RO3G_09128), partial mRNA. (483 bp)
Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA atgaccttcaatccatttgatttattttattctattacagtcatcactcttgattattcttgtaattatatttattcgagaatatctcgagtgttaccgcttaagaaaccagtggaagagaacagagaattaaaggatgaatcagcaagtaaagaatcagatcggatcgtatcacaaaatcgacagcgtcacagttcaatctcttcttgcccagcaaatgacacaccactcattctttcaccttctacttctacctcttccctttggagtttagattcaaatcgttcaagagtagaagaaatgatttatttattcgaaaccggaaatcatctacagaaacgaagatacagtatggatgcttgttatccaacttttattcgagaaagaaaatttgaatatttacccactgtgaatgaatggagaaagagagagaatagcacgacttttcctcctattcgtttgtcgacatccaattccacgtaa
position 197
XM_067663713.1 - Rhizopus delemar RA 99-880 - NCBI
PREDICTED: Rhodamnia argentea U-box domain-containing protein 7-like (LOC115752846), mRNA. (560 bp)
ttcctcaggaacaaggagttgatattagctgccggagtcgttccgcttctccaggaaatgacatccaaccatgactctcatccatcagcaacggctctatatctgaatctttcctgccttgaagatgccaagcccgtactaggcttgagtcaggctgtaccctttcttacccagcttcttaaagatgaaactgcacctcagtgcaagcttgatgctattcacgccctttacaatctctccacctaccatgacaatattggatacctgccttcggcaggcattatcagtggccttcaatctcttcttgcagatctagtgaccaaatgtggacagaaaagtcaatagctgtccttatgaatttagat
position 490
XM_048275127.1 - Rhodamnia argentea - NCBI
Puccinia triticina uncharacterized protein (PtA15_6A684), partial mRNA. (633 bp)
cctctaccaaagatgccaacctgttgccaccagttacgcgtcatgtgctggctgtgcttctgttgctcaaagctccagtagtcaagtggccacttttcaacaaagcatccagcgctccttcaccacttggcaagagatcatcaagatcggaaaatcccgtttctccgacagatggcaatctgacttcgcaccttcatttgcaagattcgatgtcgttgttaaggcggcgaacagtgcttgttcgtccttgaatctcaagctcgatgtgctcttgaaaggtttgcgattggacctcaatctcttcttgggcatcaacatcaacctgggaggcatccttggaatcgtgggctcacttctcggcgggatcctcggacgaagagaagttcagctcttggaggaatag
position 525
XM_053170415.1 - Puccinia triticina - NCBI
PREDICTED: Prosopis cineraria uncharacterized LOC129311497 (LOC129311497), mRNA. (565 bp)
pfam09402" /db_xref="CDD:430586" ORIGIN // aacagcagcaaacaagggtgccgtaaaaggcggtctgagcatcccgctcggccggacacatcactctgatctcttccaaatgaagcgcgcaaaacccaagtcccattccaaaacttcaaatcattctcacaattcttctccttctttgaaatcgttcatagaaccccctcctgatttctttccctcgaagcacgagttcctcaggctcatcgtcgtccttgcattcgcatcagcagttgcttggacatgcaatctcttcttgacatcttttattaatccctccaccaagcccttttgcgatagcaacgtagactttccggattcattttccgatgattgtgaaccttgtccaagtaatggagcatgttacgatggcaaattggaatgtctccagggctaccgaaagcatgggaagttgtgtgtagaagatggagatattaataaatcagctaaaaaaatttcggacagagtaaaatgtagcctatgtgaagattatgctcagtatttgtgctatggagtcggatcagtttgggttcaagaggatgaaatatggaaaa...
position 250
XM_054953827.1 - Prosopis cineraria - NCBI
PREDICTED: Lingula anatina protein FAM84B-like (LOC106176727), mRNA. (474 bp)
ggcagtgttagattcccttgtgccgggagacctggtggagttccaaaggtcgtggctcttctcccactgggccgtttatattggtaatgaagaagtggtccattttattgaacgcaattcaggaggtgtcttcagttcctctagtgagcgttctatgacgggggtagttcgaagggattccttttggacagtggcagggaggagtaaggcgttcaaaaacaacagaagggacgccaaatacagctgtgatgtgatagtgacgagggctctgtcaaagctgggagtgagcgagttcaatctcttcttgagaaatagtgaacattttgtagcctggtgtagatatggtgaagagtgcagtgaacaggcacaaaccatctggacaatgtttttggggtctatggctgtaattgtggggggcattgccgcactcactggccttaggcgatag
position 321
XM_013559232.1 - Lingula anatina - NCBI
Rhizoctonia solani Lytic polysaccharide mono-oxygenase, cellulose-degrading (RhiXN_09028), partial mRNA. (567 bp)
China Agricultural University, Yuanmingyuan Xilu 2, Beijing 100193, China atgcgcttcctggctggtttattgactttggcgactttggcgtcgtccgttgtcgctcatggcattgtaactcaacctccaactcgcacactcgggagtgccatgattgcagcttgcggtgaaggtgctgtctcggctcaaaaatccaatgtcaagggaccgattgaaagccagattgccaagattgattccaactacaagcccgcgcaatgcaatctcttcttgtgccgtggccaacagtttgctgacaacaaggacaaagtccaaacctacaagactggtcaagtcgtgaacattgtactagacattgagaaccaccatcctgttggctatgcaaacgtatctgttatcgatactgccacaaacaagatggttggcaagcctctgattgcatgggatccttactttactggttatccgtaccctaaggatcaagagaacttcaacgtcactattccagagctcagcggcaaatgcaagactgccggagaatgtgttctacaataccactggtactcccgaacgg...
position 213
XM_043328844.1 - Rhizoctonia solani - NCBI
PREDICTED: Theobroma cacao uncharacterized LOC108661919 (LOC108661919), mRNA. (507 bp)
cgtcataaggatgacgatgatcaggcagcatgcgtgatgctaaccagtatgactcctgagctccaaaagcagtatgagcacatggatgtccaatccataattcttcatcttagaaaattgttcgataaggaatggcgcattgagagatatgagatctctaaagaactattccgatgcaagatggtagaaatgagttttcttagaccccatgtgccgaagatgattggactcatcgagagacttagacaattgggattagcaatggatcatgggctaagtatagacttaattctacaatctcttcttgacagcttcagttag
position 481
XM_018120908.1 - Theobroma cacao (cacao) - NCBI
Necator americanus uncharacterized protein (RB195_014921), partial mRNA. (579 bp)
taccggttttattcgtgtatccactttctgaggactgcgtgttaccaacctgacgcacggaaacaaagacgcgaaggagtcatactggtactactagtctttccttggattttgacagctgtgtttactttcggatcaatagcacttggttgctacaagagatataatcgtttcgcgttaatatacacttacagctgctcccattgcgacgttataccagggatatcgttcactgacgtgaacttttacggtggacaagctttaccctcaattcatggcgctatccagcaaagacaatctcttcttgatgctcgacttgcattccaatttatcgttatatgcctctctcaatacctcgctgcattgctcttctacattgttccgaagatgagcgcaggtgctgactggggagttctggtcacaaacagtattggttcgttttaa
position 430
Synonym: Necator_chrV.g19713
XM_064205395.1 - Necator americanus (New World hookworm) - NCBI
PREDICTED: Cucumis sativus ripening-related protein grip22 (LOC101211270), mRNA. (648 bp)
CDD:439250" misc_feature order(265..267,271..273,352..369,427..432,436..438, 496..501,505..507) /gene="LOC101211270" /note="putative effector binding site [polypeptide binding]; other site" /db_xref="CDD:439250" ORIGIN // atggcaaaattggcttgcttggtctcttttttctttttggttctttctcttttgggcctttctcaagcaatctcttcttgcagggagccatgtcaaaccttgaaaaattgtaaaggtcaattgatttgtataaatggccaatgtaatgatgatcccgatgttggaactcgcatttgttcaaccgacagtgataacggagcagatggagaaaaatttcgttgtgaggcatttggaagattacattgcaaaggcaaatcgttcccccaattcaaatgctcgcctcgagtgacttcctcaactcgagctatcctaacaaataatgactttagtaaaggtggggatggaggagacccgtctgagtgtgatggaaagttccat...
position 68
XM_011658707.1 - Cucumis sativus (cucumber) - NCBI
PREDICTED: Calliphora vicina uncharacterized LOC135961545 (LOC135961545), mRNA. (511 bp)
polyA_site 511 /gene="LOC135961545" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN // atgaaggtgtatatttctttattgatgcttgttttagcattatttgtcccacttaataaagcggtattaaacgatgttcacgatgctattggatggtcaaatgtggatttgaaaaatttccaatattttaaaaacttgccatcgcaagacccaaaaagagcagcacaagccaatctcttcttggaacattttcaaaagaaaaaagcagttttagattatttcgaaaatttatttttgggcaattcaccattcacacaagagagtgaaattccatttaatcctcactttggtcgagcgtggcgtccttattatgtacgaaagtttggttggaaaggagaacgattaatcgatgctttgggcaaagggtaccccattaaacaattgaagcattttggagctatacctaaggactacggttccaagtattatcctagctaattatttcatataccatttagtcatcacatatttataaatatttaaaataaactatttatt...
position 171
XM_065513049.1 - Calliphora vicina (urban bluebottle blowfly) - NCBI
Necator americanus uncharacterized protein (RB195_014921), partial mRNA. (591 bp)
Zhan,B., Aroian,R.V., Pafco,B. and Schwarz,E.M. TITLE Direct Submission JOURNAL Submitted (21-AUG-2023) Molecular Biology and Genetics, Cornell University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853, USA atggtcgtcggctatacagtcatagtcatcagcgtttaccgtaatcgtagaattcatggcgctatccagcaaagacaatctcttcttgatgctcgacttgcattccaatttatcgttatatgcctctctcaatacctcgctgcattgctcttctacattgttccgaagatgagcgcaggtgctgactggggagttctggtcacaaacagtattgttatggaacaacagacatctcaaaagtcgctgccgtcagtgtcaacgcttctgtttcgcgacattttgtggtccggtaacggtcgcagcggttgtgatgctgagctgcagttaggaaagctttctggtttcactcccgaaaaagtggagctcattgtgctccacattcat...
position 76
Synonym: Necator_chrV.g19713
XM_064205394.1 - Necator americanus (New World hookworm) - NCBI
Puccinia striiformis f. sp. tritici uncharacterized protein (Pst134EA_002690), partial mRNA. (597 bp)
ggcacacatcttcaacgacaccaagttcttcagtcaacttgagctcggcaatcacgatgttatccagacggggaagaaagacgcaactctccccatcgaaggcactggaagggtaaccttacaatggagcacctctacagttttgctagacaactgcctctacgttccagatattgtaatcaatctcattagtgctggtgctctgctagaaaaaggttgccaaatcgttgcaaagaaaggtagctttactgtctccaaagaacagcaagatctcttcaaaggctccatcgatagcaatctcttcttggtcgataatttgtatgcaatcatctaa
position 558
XM_047941149.1 - Puccinia striiformis f. sp. tritici - NCBI
Caenorhabditis elegans Unclassified non-coding RNA ZK1193.9 (ZK1193.9), ncRNA. (133 bp)
AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA gaaggcgaccacgtcgtcgccaagaagagattgaagacgacgaatggagcgaaagtagtaaggaggggttgagggggggggaggtcgggatcgagatggcataatgtaggaaccggatggaagagtctaaaag
position 21
NR_070329.1 - Caenorhabditis elegans - NCBI - UCSC - WormBase

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/en/zoo/both%3acaagaagagattg
lang : en | div : | spe : zoo | query_string : both:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.087 | 0.087 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?to=0&format=json
0.134 | 0.047 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.141 | 0.007 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]