2024-11-15 17:57:57, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_010718965 3661 bp RNA linear INV 28-JUN-2024 DEFINITION PREDICTED: Pocillopora verrucosa systemic RNA interference defective protein 1 (LOC131780885), misc_RNA. ACCESSION XR_010718965 VERSION XR_010718965.1 DBLINK BioProject: PRJNA1099672 KEYWORDS RefSeq. SOURCE Pocillopora verrucosa ORGANISM Pocillopora verrucosa Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Pocillopora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_089321) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036669915.1-RS_2024_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/25/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3661 /organism="Pocillopora verrucosa" /mol_type="transcribed RNA" /isolate="sample1" /isolation_source="Coral reefs" /db_xref="taxon:203993" /chromosome="10" /tissue_type="Polyps" /geo_loc_name="China: Spratly Islands" /collection_date="2017-10-20" gene 1..3661 /gene="LOC131780885" /note="systemic RNA interference defective protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:131780885" misc_RNA 1..3661 /gene="LOC131780885" /product="systemic RNA interference defective protein 1" /db_xref="GeneID:131780885" ORIGIN
agatctgttgttagtaacacaacaaaccgaagagggctctgtctcgctaactcaaagtaacaccagattttcttcttaggatgttctttatcgttaatgcattcctgtttgctctcacttggtgcctccctgcctggggaaaacttcaggcaaattgttcgtccggcatgaatgtttcaaattccctgaatgtagtgacagagatcagtggcagactacctgacgataataatttacaacgttcctgcgtgttgaagttggacaaacctagtagctttttacgagtgagtactcgaaagaatgacaaccaaagaggtttcttgcatgtttttctgtaccacgccgatggatcatccttacttggtcacctgaacgtttcagaaccatcaacaatttggaacattctgaacatttgtcccaccggtgtgactaataatgtaaccacagggaagaagttgttatccgtggttggaaagggcagtgggctttccttcacagtgaaaatagctgaaggtgcatcagaaattgcgcttgatgaaccacacacagtcaatatccagggagatgaggtgagcgtgttccagttcattccaccccaaggtatctctgataaacaactggacattactgccacgtcacagtcaaaccttgctgcttacttaaaggtatcacacatatgcgaagatgtccaggaaaacttagaagttgtggattacaaaaaggaatctcttcgactttcctttgccacaaaaggacggataactttatccagagcttccattccctctttaactgattccgcctctagatggttcattggaattggtttgaagaacgtgtcaggtgacgtcaaatttagtgagtcaaaaaatgttactttaaagctgacaaggtcgtttgattataactatgccatacctgtttctgccctattactcgcatcacttctgggtggtatagtagtgtctatcgtggcacattttctttttaaagagtccctctctgagataaggtttggtggcgcaactgtaatggccaacatgaatggtgcgatgggtatacaactccagttccttccaccaggtgatcaagccaataataatcgaattcaaactaacctaaaaatttcatgttgcgatctgtgggaggtaatcagatatcactggttttcctttggtccaaagacctattcctacatcacaggtattgtgggtaatgtgcttatggtaggtgcttttcagttcgtgtttgcaaactggtatacgatgattcaggaagggaacagagataattgttactacaacgacttttgttatagagttacaaatcatgatattccgtttaacttgatgataagtaacttatcatatatagtccacggtctaatcttagctgtgtgggtactgatactggaaaccaaactaaatgtgcggttcaaaagcaacacgaccagccgcacaggcactggagccgccgtggcatggggatccgagctaccaaaccatgttctgttatgtcctgaaactaactttcatatttttgaaggaggtattccaaacacaatcatcgcagagcctgaaagcaaaaaaattattgccgcagcactgaaaaagaagtactgttattccattgggtatgcgttttcctgggctttggttttccagggattattttccactctttaccacttatgccctagcagcttcacatttcagtttgattcggcttttatgtttatcatggctggtttatctgtgctgtttttgtataatggctttgagcagaatcgttgtccttcttccgaaaatgtgaagtaccctgtgggtgcctctaatttcttccttttttttattgtgcctctctttatttttaactactttggtacgctctttaactctgattctgggcttagcaaaccattacagaactttttcttcgcattcctgatcatttggtggcttttgatggtttattgggctttttataagttaaatatccaccaaggagtatgccgaaatgcatgtaatgtgtttttattcattttgggtggcctggtagtacccttggggctctttttgtgttttttgttcaccaatctgtcacaggtgtttctgtatacctgcattatttgtagcatcattgctgtcctcgctaaacttaggccctggagaaagctgtgctgttgctgtgaatgcaggcgcaattgcccaacggccaaggtaatttatcaaaggcttttcatccctcactttcatcgttttggtcggagcttttggcgttttcaaatggctgcccaccacaagcaaatcgtcgacgccagaaaactcccgtgaccaaaacgaagaatgtgcttttctggaatttttcgattggcacgatctttggcattttttgtcctcctttggtgtcctaatggccacaattgttatcatgtttttaagttctaaacccgtgtaaaagtcgtaggcttcagaatatgtaatgcaagggagtgcaatgtaaaactccacataatagagaagttttcaactgcatgtcaaaattaatctaggattgctttgtttgctttatttcggtctgtgaatggtgtagaaaacgcgcacattcttcaaccaattagatgcaaaacaaaaataaatcgcgactttgtccaccgcgatttcccgcgctattggtagtttgcttgtataatttgtgttctcatcggctgttgataatgttaaccatcgttatgattgcttgttaggatttagaggttttggtttttcgatagtcagttgaaaactgttcttacagacgtggtgatgatggtgggatttagactataaagggggtaagtttctgaagaaagtgtgatgctgcgtcggtgagagagtataacagggtaatttagtgttatcaactaagttgatgatgtaaattggccactgtacagagttttagagctgacgttttgaatgtcagcccttcgtcagagcgaatggtttttcgtttttcgaatttagattatagccgcggtgaacatagtctcctttattagtaggagttaacattaggccttcatgtcaagtaaatatcggattgtgttggtttcactttggtgaaattaaaaggcattttgaatttaaaatggaagcatggggcaagtacaggtggtgatggacagtgggtccataaactcttcaatagtcgccaaaggacacttaatatatagaaggttttgaaaaattgatacgcgcgtaagataatcgcaaggtgcgtgttattgtttatcaaacccgttacaagcataataatcaagagagggattatgaccagacgagagttaaatgtacattgtaaataacttgcttttcaaactcgcattcgggtattcttaaaacttactgagccaagcgctgctaatcatctttttaacttcagctagcagtataaccagccagcatttacaaactacgtaatcttcatcggcattatttatattgaccaatattggccaccaatagaaagtaagatataatcgtcctagaagttacagtctctgttacaatactaggatacaagtttattaaagtattatgttagttaaacggtactttcgcgtttactgaatttaagaagaagtataataataaacagtgcgttggattgtatgctcatg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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