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2024-11-15 17:59:40, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XR_009699446            4451 bp    RNA     linear   MAM 04-DEC-2023
DEFINITION  PREDICTED: Eubalaena glacialis NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            misc_RNA.
ACCESSION   XR_009699446
VERSION     XR_009699446.1
DBLINK      BioProject: PRJNA1046016
KEYWORDS    RefSeq.
SOURCE      Eubalaena glacialis (North Atlantic right whale)
  ORGANISM  Eubalaena glacialis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha;
            Cetacea; Mysticeti; Balaenidae; Eubalaena.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_083717) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_028564815.1-RS_2023_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/01/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4451
                     /organism="Eubalaena glacialis"
                     /mol_type="transcribed RNA"
                     /isolate="mEubGla1"
                     /db_xref="taxon:27606"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /dev_stage="calf"
                     /geo_loc_name="USA: Amelia Island, Florida"
                     /lat_lon="30.591667 N 81.441667 W"
                     /collection_date="2020-03-08"
                     /collected_by="Teri Rowles, Bob Bonde"
     gene            1..4451
                     /gene="NRDE2"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins"
                     /db_xref="GeneID:133084479"
     misc_RNA        1..4451
                     /gene="NRDE2"
                     /product="NRDE-2, necessary for RNA interference, domain
                     containing, transcript variant X2"
                     /db_xref="GeneID:133084479"
ORIGIN      
ggcggtgaggcctgtgatcatggcgctgttccccgcctttgcgggtgttagtgaggcgcccgagagcgggagccccaggaaagaattagactggctgagcaacccaagcttttgtgttggaaccgtaacatctctgggccaacaaactgaagaggccacagcctttgtttctgaagagtcgctactgaccaggagtcctctgaattcagagccttcagatgaaagtgacactaacagaaagcccaaacaaacaagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcagcaccacaagaaaaccaagagaaaacgtgggcagtcaagtagcagtggatctgagtcatatactgattctgaaaaggacagatcttccagaagcatcagagacagtaaaaaggaatcagagaaaccaaatcaagaaaataatgccactgctgatattggacgtcactttgtttggcttgaggacattcaggctctgacgggagaaaccttcagaacagataagaagccggatcctgcaaactgggagtataagtctctttaccgaggagatgtagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgtgtatcttgggaggggacttccacagagaagaagcggtcacacaagcatgtcgagcgctactttacaaagaagagtgtgggattaatgaacattgacggagttgccattagcagtaaaactgagcctccctcatcggagtcgatctcatttatcccagtgaagggtgcagaggatgtggtttcccctgttacaacctggttgaaccctctggggatttatgatgaagccaccacgcagtggttacaaggccggggtccttcagagcaagaatccaagcagccagattcacagcccaacagagagagcgtgcttctcaaggccaaggtggaggagtttaacaggagggtatgggagaatcctcgggatgttcagctgtggatggcatttgttgcttttcaggacgaggtcatgagaagtccgggcctgtatgccattgaggaaggagagcaggaaaagcggaagcggtccctgaggctggttctggagaagaagctggccattctggaacgggccgtggaaagcaacccgagcagcgtggatctgaaactcgccaagctgcagctctgcaccgagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttacatcccaacaatacagccctttggcagaaataccttttattttgccagagccagtttagcaccttttccatatcaaaaattcagagtctttatggaaaatgcttgagtactttgtctgctgttaaggacggcagcatcttgtcccaccctgagctgcctggcaccgaggaggacatgtttgccctctttcttcagcagtgccactttctgcggcaggctggtcactccgagaaggccgtctctctgttccaggcaatggttgacttcaccttcttcaaacccgacagtgtgaaagacctgcctaccaaaggacaggtagaattctttgagcccttttgggacagtggagagcccagggctggagagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcgtcagcccagatgatgacgacgatgaaccggaagacgacgaccaggaaattaaagataagactctgcccaggtggcagatctggcttgctgctgagcggtcccgagaccacagacaatggcggccgtggcgccctgagaagaccaagaagcaggcggaggaagactgtgaggacccagagagacaggtgttgtttgatgatattggacagtctctgatccgactttccagcccggatcttcagtttcggctgattgcagcctttctgcagttcttgggtgtgccttccggcttcagccctccggcctcctgcctctatctggccatggatgagaacagcatctttgacaatggactttatgatgaaaagcccttgacttttctcaacctttcattttccggcgtcagctgtgtcggacgcacagaccaactgagttgccggcactggaccaggggtcacagtcgagagggcgaggagttcatccgcagcatcttccacctcgtgatgcctttgttttcaggcaaggagaggtctcagctctgcttctcctggttacagtacgagattgcaaaggtcgtttggtgtctgcacactaaaaacaagaagagattaaaatcacaaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagacaaccgcaacaatttttgcctctggaagcagtatgcgcatctggagtggttgcttggcaacacagaggatgccagaaaagttttcgatacagcactcggcatagcagggagcagagaactgaaggaccatgagctgtgtgagctcggtctcctctacgccgagctggaggtggagctgttgccggacgtgaggggggccgccccagcccgagccattcacgtattgaccagactgaccgagaatggggcctacgggccctacactgggcaagtctcggccgttcacattttgaaagctcggaaggcttatgaacacgcgctgcaggactgtttgggggagagctgtgtctccgatccagctcccgccgattcctttagccgcctgattagcctggttaaatgctttatgctcttccagtatttgaccatagggatcgacgctgctgtgcggatatatgagcaggtatttgcaaaacaccaggtctctgtttccgcagagggccctggtctggagggcagtgccagcccccagagcctgagcagcgtcctcgaggccgtcaccctgacacacacgagcctgctcaggttccacatgaaagtcgccgtctacccactggctcctctgcgagaggctctctcggaggctttaaagttgtatccgggcaaccaggttctttggaggtcatatgtacagattcagaataagtcccacagtgccagtaagaccagaagattcttcgatgcgatcaccaggtctgccaaacccttggagccgtggttgtttgcaattgaagctgagaaaatgaggaaaagactagtggaaaccgtgcagagggtagacggtagagaggtccacgccaccattcccgagactggcctgacgcatcggatcagagccctgtttgaaaatgcgatgcggagtgactacggcagccagtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaattgtccttgggcaaaggtgctgtacctggatgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgacggagaaggagctccgggtgcgcctgccgctggaggagctggagcttctgcttgaggactagagaccaggaggggagtggggcgtgcctccgaggcctcggcgcctgccccgtgggagccaggagacaccagaagagacgctgctgttgaacaactgccaccagctctgggggtgtgacggggcagcaggtattgaagtctgcagtccttttggtcagccagcttccttaacacccggatccaccgacttgctgctgctgagaggccggtgtggagggcccagaaacaggattcagtgtttgagaaagagcacgctttattgggaagagagcgctgcacgcgaccaacatacgaagagggctggatgggcatcctacacatcatgctcaaaaggtactcggggtgctgcgctagtgaaggtcaaccggaacatggactcctgggcaacttccccaacctcacacctctgagggggtcgacacacttccaaccttttcctggaaggcaactgtggtccactagagatagagcccctcaggggtgccttcttgttttttataaagaacattttctttagactttttgaagtcttcatttgttactttcatcctacgttctctcaaggccatcagaccagcttccgtacagattgcctgtaaggagaaacagtgtgttcagaaagtgaaatactttttattccagcaattcagagagtgctgttttgaaatctggtgtaggcacccaacctaaacacgaagttctcacaccatctgggaatgattagattttttaaatgttttaaacattctaattattttcttaaaggacctgaggtggcttaaactgggaatatttcactaaggaagaggactggctcaggttctaacccgccgtgtggcctggcaggtcaggaagttctcacaaccctgctttcattaaagggagtgatcttcctaagaaatacataaaattattctagaaatttagagcccaaat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]