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2025-04-22 05:02:48, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       XR_007213257            2285 bp    RNA     linear   ROD 19-MAY-2022
DEFINITION  PREDICTED: Perognathus longimembris pacificus dicer 1, ribonuclease
            III (Dicer1), transcript variant X5, misc_RNA.
ACCESSION   XR_007213257
VERSION     XR_007213257.1
DBLINK      BioProject: PRJNA837248
KEYWORDS    RefSeq.
SOURCE      Perognathus longimembris pacificus (Pacific pocket mouse)
  ORGANISM  Perognathus longimembris pacificus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Castorimorpha; Heteromyidae; Perognathinae; Perognathus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_063174) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Perognathus longimembris pacificus
                                           Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2285
                     /organism="Perognathus longimembris pacificus"
                     /mol_type="transcribed RNA"
                     /isolate="PPM17"
                     /sub_species="pacificus"
                     /db_xref="taxon:214514"
                     /chromosome="14"
                     /sex="male"
                     /cell_line="21356"
                     /cell_type="fibroblast"
                     /tissue_type="trachea"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Santa Margarita"
                     /collection_date="2019"
                     /collected_by="SDZWA"
     gene            1..2285
                     /gene="Dicer1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:125363638"
     misc_RNA        1..2285
                     /gene="Dicer1"
                     /product="dicer 1, ribonuclease III, transcript variant
                     X5"
                     /db_xref="GeneID:125363638"
ORIGIN      
ctccaagcgcgtgtgcgccgtcgccgcgggccgagcgcgggctgcgggcgagccgggcgctgcgcagtctccgcaggctccggcgggaggggtcgaggcgcggcgcggcgcggcgcgggctgctcccgggcccaggtgaatggagtaacctgacagcgggagcgtggcgacggcgagcggcaggaaatggcggcggcggcggcggcgccgggcggcaccgggaggcctgggctgtgacgcgcgcgccggagcggggtccggatggttctggaaggcccgcggcgctcgtgctgcaggttacctagggtatgaattaatacagacttggaaactctgaaagaacttagaatcagcattttgagagcagaagcttgggcatgctgtgattttccaataatctgctatcacaatgtcaaaatgcagttcagacaacagcaacacagagccctcaaaccctaaaacgtaagctgtgctagaacaaaaatgcaatgaaagaaacactggatgaatgaaaagccctgctttgcaacccctcagcatggcaggcctgcagctcatgacccctgcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataacatttatacgccaagaaaatatcaggttgaactgctcgaagcagctctggatcacaataccatcgtgtgtctaaacactggctcagggaagacatttatcgcagtactactcactaaagagctgtcctatcagatcaggggagacttcaaccgaaaaggaaaaaggactgtgttcttggtcaactctgcaaaccaggttgctcagcaagtgtcagctgtcagaactcactcagatctcaaggttggggaatactcaaacctagaagtaattgcatcttggacaaaagagagatggaaccaagagtttactaagcaccaggttctcattatgacatgctacgttgctttgaatgttttgaaaaatggttacttgtcactgtcagacattaaccttttggtgtttgatgagtgtcatctggcaattctagatcacccataccgagaaatcatgaagctctgtgaaaattgtccatcatgtcctcgcattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattagaagaaaagattcagaaactggagaaaattcttaagagtaatgctgagacggcaactgacctggtggtcttagacaggtacacttcccagccatgcgagatcgttgtagattgcggaccgttcaccgatcgaagtgggctctatgacagactgctcaaggaactagaagaagcacttaattttatcaatgactgtaatatatctgtacattcaaaagaaagagattctactttaatttcaaaacagatactgtcagactgccgcgaagtgctggtggttctgggaccctggtgtgcagataaagtggctgggatgatggtaagagagcttcagaagtatatcaaacatgaacaggaagaactgcaccggaaattcttgctgtttacagacactttcctgaggaaaatccatgcactgtgtgaagagcacttctcacctgcctcccttgacctgaaattcgtaacccctaaagtaataaaactgcttgagatcttgcgcaaatataaaccatatgagcggcagcagtttgaaagtgttgagtggtataataataggaatcaggataattacgtttcttggagtgactccgaggatgacgatgaagatgaagaaattgaagaaaaagaaaagccagagactaattttccttctccatttaccaatattctctgtggaattatttttgtggagagaagatacacagcagttgtcctaaacagattgataaaggaagctggcaaacaggatccagagctggcttatatcagcagcaactttataactggacatggcattggaaagaatcagcctcgtaacaaacagatggaagcagagttcagaaaacaggaagagaatatcgatcctatgttcagtctaaaggaagagcaagggccccgatctctaattacataatgttagcagacacagacaaaatcaaaagttttgaagaagacctgaaaacctacaaagctattgaaaagattttgagaaacaagtgttccaagtcagtggatactggcgagaatgatgtggaccccattgtggacgatgatgacattttcccaccgtacgtgctgaggcctgatgacgggggcccgagggtcacaatcaacacagccat
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]