2025-04-22 05:02:47, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XR_006843613 3494 bp RNA linear VRT 03-FEB-2022 DEFINITION PREDICTED: Scatophagus argus alkaline ceramidase 1 (acer1), transcript variant X2, misc_RNA. ACCESSION XR_006843613 VERSION XR_006843613.1 DBLINK BioProject: PRJNA776026 KEYWORDS RefSeq. SOURCE Scatophagus argus ORGANISM Scatophagus argus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Scatophagidae; Scatophagus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_058498.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Scatophagus argus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3494 /organism="Scatophagus argus" /mol_type="transcribed RNA" /isolate="fScaArg1" /db_xref="taxon:75038" /chromosome="6" /tissue_type="muscle" /dev_stage="adult" /geo_loc_name="Singapore" /lat_lon="1.3521 N 103.8198 E" /collection_date="2018-08-06" /collected_by="Byrappa Venkatesh" gene 1..3494 /gene="acer1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:124060647" misc_RNA 1..3494 /gene="acer1" /product="alkaline ceramidase 1, transcript variant X2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:124060647" ORIGIN
cagctcacaacctgctcccccacccactcaaggcgtttacggttttattttgaaagttggccctgatgctgtgcgggcagataggacgcttaagactgtggagaagagaggaagacgtaatggggacatcagcttttctcatcggtgtcttaatggccgggaggcgtgaaaccgctcgttatgatcggtcgtgacgccacaggctcgtgagcgtttcgacgctccgccccgaaaatccacctgctgttgctcttccacctggaacaggagcaacactgacggacaggaggccgggacagcagcaggagcagcggcatgggaggtgttttctccaacgacaaaatggcgacagttttctcctatgagagttcagaaatcgactggtgtgaagacaactacagacactctgaacacgtggtggaatacttcaacactatgagcagttttgttttcttcatcatatctcccatcatgctctacctgctgcacccttacgccaaagagaggaacctggcgattcacttggtctggatcatgatgatatttgtggggatcttctcggcgtacttccacatgacacttagtttcgttggccagatgttggatgagttgtccatcctgtgggtgctggcggtgggatatgccgtctggttcccccgcaggctcttcccttcttttataaaagacaggtccacattttcaagtctcgtcctggtggtcactgtcatcaccacagcgtcgtcatttgtaaagcctacagccaatgcttacgctctgaactgcttcggcctgcatctgctttacgttctggctttggagatgagatgctgcaccgaccagaaggctttgcgactggccaagctgtcggtggctctgtgggtgctcgctatctcctgctggattagtgaccgttttggctgcagcctctggcagaggctaaacttctgttacctgcacggtatctggcacattctgatcgtcatggctgtggcctatggcagcaccttgattgcttacctggatgccaactatgagataccgtactcactgcctggactgcagtactggccctgtgataaatgggctgttggaatacctcacattgtcctgaagggctcccccaagacgcagaaacggtgctaaccaagttaaaagtcatttttaactttggcgaaacacttctgtcgatacgcttccttagtacagcagtaatacactgagcaagactaggcaacaaccaaatctaagtgacaggtaaaggattggttatgccatggatggattaataagcctaatgtgctgagaagcctgagggatcaggaggccccaagggttttatgacttgttctcccatttcgcccattgtcttatttacaacaataataatgaccgtaggcacagagctaatgcaaacccacacaaaataatcccgttatttatcaaattgattatcaaattaaaaatattgcgtatttaaatatgaattttttttcctgataactaagtattagtatttctaatacaaatagcagaacattaggaagtatcattatcactgtttttgatggagaaacttatttgccaattcaataataataataataatccaagtactgttagaaacagctgatgtttagaactgactgatgttgagcttgcgccgagaccccgaacgactgagaaaataagagtgttattgtgtgtattttgaagggtttgtctgtgaagcgtgtgcgtgctttttgtaaatgaattgctgggatgcacatttgattctgcgcaacgtggaacatgtggacatgttttcttgtgatgagaccgatgcttttctagtaacagccgacagtcttgagcgcgacagtttgagtgaggcaccacagtgtgatatattttaaagtcacattgtagtcacacagtcatacaccctgccgccaaaggccagatcgagctgttgaaccaggggaccagtggtcaatgttgatctaaaaggctttaaacaggaaaccttactttgaaatcgttgtatttcgacgcaaactctggtcttgacatgagtgattttcctgctgctaatgtagaggtaccgcagttcgcgacgcacattcattcaagcctcgggtgaagtttgcgtgagctttctgaacaacgtgataggaacgatcacgtaaaggcgtttgggaggatctaccacctttatttttggacacactgcatccactttagcattgttagacctttctttttcttctttttttcttcaaacatcagtcacggttctgactgaataataccaattgtctggctccagtcttccctaaccacagccgtgatctcatcttccagaaagtttcattttctgtttccttttgtccgcgcttactcctgaataaaccctcatgtgtgcttgccgccgttttataaggtgaaaggaaggtgccatcagtttatgttgatttgagttcatagaccgtaggtgctcaagttagtaatgggattcttagagcctgcggatgcaacgttttttaggtttttatgctgggcacccaacaaaatgtaagtacacgtcaggggtttaaatcttagaatgtttttataaatgaggtccctgaagtgagtgtttatggcatgttagaagatgctgtggttgatgacgttattgtattttaatctcaggacatttcttacattttagcaccacatgtctgtgaatgtcggattattctcaggtctgctttttgtctcgttcaggagcacaacaagcacatccaaagcgatttgttttgtatgactgttgcatcactgaactgttaaaagcccttgattttggtgacgttttgagaatattcaggtgccttgtgtctccattcacgtgatctttcctgaaggatacaatagacagaacaatagatgttttactaaatgaaatgcacgcggccactgcagcagggttcaaaagtgacctcctgtggttgctgaaattgctcaaaggtatctagtgcttttagaatctgtgattattagctggtgacagccagatgataggtagttatctttaccttgtcagagcaaatcaaacagtagttttgcagaaaactgttggcctctgtgtccggatcagggttccccaacctctgggtcaggactcccttgcaggggagaggggggatcacatgtaaaatcagaggacttcagataattttcagcaaagccagcatcatggctgtatgataatgtcagtcaggttggttcactgctttggtccaggctgaaatatctcaacaactgctgaggtatttcccataaagttttgtatagaagctcatgaaacctcagagaatgaatcctacacactctggtaatcccacaaccagggcatttattcagtcatagagaaagatatgctttgtgtacattatttattcaaagtcatgtttggattttactgaaagtgtttttggatacgttttaccttccaataaattgctgttatgtat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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