2025-04-05 08:28:00, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XR_005218685 5568 bp RNA linear MAM 19-NOV-2020 DEFINITION PREDICTED: Choloepus didactylus testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X4, misc_RNA. ACCESSION XR_005218685 VERSION XR_005218685.1 DBLINK BioProject: PRJNA678727 KEYWORDS RefSeq. SOURCE Choloepus didactylus (southern two-toed sloth) ORGANISM Choloepus didactylus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Pilosa; Folivora; Megalonychidae; Choloepus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051307.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Choloepus didactylus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5568 /organism="Choloepus didactylus" /mol_type="transcribed RNA" /isolate="mChoDid1" /db_xref="taxon:27675" /chromosome="1" /sex="male" /tissue_type="spleen" /dev_stage="adult" /geo_loc_name="Germany: Tierpark, Berlin" /lat_lon="52.520008 N 13.404954 E" /collection_date="03-Mar-2014" /collected_by="Gudrun Wibbelt" gene 1..5568 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:119543656" misc_RNA 1..5568 /gene="TOPAZ1" /product="testis and ovary specific PAZ domain containing 1, transcript variant X4" /db_xref="GeneID:119543656" ORIGIN
ggggcctcggcgggcaggacgggtggccccggacggatgaggcggccgccgcctccgggccccgtagcggccccgaggcatgaaggcgaggcacggggctcaaggaagcgaagccggagggcggtgccagggccaggcgaggcgggaatctgcggccctgtggccggtgctcgcgaggagagcaggcgaaagggaatggtggcccgggcgtctgagagagaagagatggaaagtgagaagtcgggtgaggcgtccggggctgggaaggccgcgaggcggcgagtggagggatcggagggccaggcgggcccctcgagtgaagactggccaggtattgaagcagcggaggaggcggagctccccttgcattctggaagacacaccaaggaaaaaagaaaagctaccgaagcctcaagtggtgactcacagccagggattgacctggtaaggaaggaatcattaaccagttcggaatctttccaaacagtggagtacagtgaattccaaagcatggctttcttaaagtctttgggtaaggaatgtttggtagaaggtattaaaagaagaattcgaataaaaaagtttaaaagtttagaaagcctacctctcaaaataactgaaaataagtctacacaaaatattaagattgaattccaagatgaactgtacaagaatactctgaaatgttcttgtaacagcttgtcacctggaatagaaaataattccattttaaaattacataattgcaattgtttcccccatttcaagggttgtaatgatgacaacaaccttgtatgtaaacctgatgttggatgtatgcatgtagcagaaaattccttgatgttaaagaaagaaaattttaagagtcttgcagagaagagtgacacaaatagtattcctcaacttttaaaaaatgaagaagatttaatgggagtaaataaattattgcttgaagaaagtgatttatgccaaagaacaaataatgccttatttccctgccttcaaagtgaaaaaagtaaatattcaatagaggagagcaacattgggagaaaacccaagaaaaggatgaagttgtctgaaaaagaagatgaaaccatcattgagatgaccttctctaatgtgtataacaagtctgaattagtgttacaagaaaatcaaatgtgtgccgaatataaagaagggactttagaggtgaaaaaaagtcctttaaatgttttgagaaaagtaaaccaaaatgcgctatcgccaagggatcattcattaagtctcccagaaacagtgggaaaaaacccaagtcttgaacatcatgtaaatgctatgtttcatgaaccacttttgaaagaagaactgaagaatgcttcagagcccttaggatgtaaaaacatggagtccgaagattttaagtcagtgaaaagctcaataatgaaatcacctaatgatatatctgatctttctgattaccatcatattgaacagggatcttcacaggaaaacttgggaaatgaagctgaagactcgaaattgagctgtcacagaacaatgccaatgactggcaaaagaacttggccttattattcatgtgctagaatatccatccagtgttggaaaaggggttccttgcccaagtcaaattactttcttcctaggtctcaggaaaacattagtcaagaagattttcttaaacaccaaacaaaccaaactcacttaactgattccaaattattgttacaaaattctataacagaaacaaatattgaatcttcaagtaaagaaaaattggattctaatttaaatagtttgtcttcagtttctgcaatagaacctactttaatggttttggaggaacctataattaatgatggtaaaaggatgaggtcagaggatccaagcagaagtgggtcagaggtagtttctaatactactgaagatactccattaagtaatatgactgaaagcttaacaggaagcaaaaaaaaaggtagagggaatttaacaagacttaatgtgacaatgtcttcccaggatggccaggaatcaaataactctacaggcaaaactatccatcgaaaagctgtcattgccaagcaaacacttgtggctccagacttcgttaaaatattgaacacaggacgattgactaattttaaaattcctttacttaaaaataaaacagaaaaaagaaaagtaaatgccaagtcatcggagagagaagcttatagtcccctagaacttcttgacaatttgtctggagcagaggcaagacagaacagaagtaaagaaaatgcttccacagtcacttcaggacctccgtctttgagcatacaaaatagtgtaacttcagcacaagctacttctggctctctctacagtaagaattcctgtagtatttcttcaagcttttcaaagcaaggtaataataaaccatccagttacatctctgaaccaggcaatagtgtttctaataaggaagctgtttctctcacagttgaaaataatactttttcttgtgatcctggttatatacagaaaaatccttccttttgctctaatgaacaagaaacatttggaacagtttcctctgaagttagtggtacaaaaatgactaagagcatttcagaaattaaagtggactttccagatattcttaaagcatacgaagatgatgtccttttaattgatgtaattcaagatgacccagacctctttggagtctccaatgaaggggagcccttgtatacttcagaggtccccatgatcagccagaagcccagtgtcgttgaagagcaccaatcaacagactccaagcacatggaacttccagaaaaagaagaaggcgatgacttgagagaacttctgatactggaccctggattgatgacatcagaaatttgtgattccttatcaacagcaaatgagataaaacataattccaaaagtgtgaacatttccttagaagttaccaatgagaaatctgaaaatgagaaactgggagacctcagtgaacacataaaaggttcagacttggatgagaagtgtatactttcaggcaaggtgactattcaagaagaaaaagaaaatattgaagaagtttgcaagagcaaagattccaaaaatgcagagattatggctggtgaatgtcagttaacagcactgggcccaaaacctctgtgcttaacagtgccacctttgaatctaagtgctcctcaagaggacacaatattgaagccctggatgaatgatttcagatttccaggaaaacattctctcttaaaattgaagaatcctgaaatttatgaagtatttaagagggaaaaaaatgtaggggtgttccagaagccactagggttgatgataccccatagatactgcaaatttcattttaatacgttacgtggctgtgagcgatcacaatgcaagtttgcccatgtccctgatcaaggagatgaaaaggtttgcatggatgtgtttaagaaatatataagtatcaatgagctgtgtttgctgcaacgtgcagtgagcatgtttatgaaatactacagaaagtttcctcccggcatatacttcgatttacaagtgttaaatggccttctaaactctttactcgagcattgtttattgaaagaagtttttcaggtagtgaatctcagcataatggttaaaatgctgcctgctctgaatatattactaaaaatatttgagcatgtggcaactatgaacttaaggaatgctgtacctgctttagttgatatcttttgcaagcttgttgaatctgggatggtgcttgatccagaacactttaactatattgttaaactcttataccaagtacaggcttccaaacaagaaataactgcagttctggaaatgaaatctaggttacagatgaggcaattgaaaaagaactggaagtgtgatttagattcagccttgaatgaaattgagcattgtaaagaaaaaagtgactggaccaaattgggaaatttatatattaatgtaaaaatgggctgtgaaaaatttgcagatttccagagattttgtacttgtattgctgaaacactaacaaaagactgtaaagaggagagaccagctgttcctttctgtgaatttgctgaaacagttggcaaagacccacaaaatagtgaagtagataaaactttgctggggagaatcgggatcaatgccatgtacttctatcacaagctgttgcagtggtccaagggaaggaaggtcttagataaactatatgaattaaaaatacatttcacaagtttaaaaggacttacaggacctgggaagttagcaccaagatgtcaaattgtgaatattgcagcggaaatttttctaaaaagtggaagtctagatggtgccatttgggtgttgagagagtcagaatggataatcaatacaccactgtggccttgtgatagactggatgttctcaatcgacacaatcttctctgtacaattgcacatgaaatcttagccaagagcctttacagacagacatttgaagttttacaaaatctaccaggttttcaaaattctcaagaaactgtggaggtctcacagtatagccttctttttaataaacttctggatgcctgtatagaaagcaacagtcttggtatgtcatcctccgtagcagaattcatgatttcaaagagcatccctattgatttttcctttcttagaagattaattacttctttaggaaggagctgtttatggctcaaagccagaacccactacaaaagtgctctctcattgggctgctacccaccattggagggaaatttataccgaaaacttctactgattccttcttatttatctgagattgaaatgcttttagctatcgaaatcttcctggtgtctaatgctagtagtattcagaatcctggaacttctacacagacactgcagatagttttgaaaaggtcaagtgtcctcacaacatgacaactattcccagagtgagcaatccaagagagaatgagtga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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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