2025-04-05 08:23:44, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XR_002874125 4838 bp RNA linear VRT 15-FEB-2018 DEFINITION PREDICTED: Oryzias latipes testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X2, misc_RNA. ACCESSION XR_002874125 VERSION XR_002874125.1 DBLINK BioProject: PRJNA183868 KEYWORDS RefSeq. SOURCE Oryzias latipes (Japanese medaka) ORGANISM Oryzias latipes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_019869.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryzias latipes Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4838 /organism="Oryzias latipes" /mol_type="transcribed RNA" /db_xref="taxon:8090" /chromosome="11" gene 1..4838 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns" /db_xref="GeneID:105354987" misc_RNA 1..4838 /gene="topaz1" /product="testis and ovary specific PAZ domain containing 1, transcript variant X2" /db_xref="GeneID:105354987" ORIGIN
gctcattatcaaacatgagcacagtggaccggaagtcctcacctgtccgactaaacactttattcccaggctcccttcacagccacagagtgtaaagtgtatgtgaaatgctgacttctctatgggcgacatgctccaatcttccagcagagtcaaactcaaccgagtcgccctgaaggacgtcattggggtcaaaatagctccgaggcggagaaaagtccagcagccgagggccgactccaaggaggaagacaagtccgtgctggaagactcgggatgtaacaaatcccctcgggatgttttatcatacaagaagggcgcagaaaacgggagagcctcgtccattgcggctcccggcggaaagcaggagaagcgcgtagacaataataggacaaactctcctggacctgcaggtttggaaggttctatgagaagatccaatggctgctttgactctgtctgccaggagtccaagttctccctccgtccacagaaaaatggttctaaacggggactgaaacgtccaagctctgacccggttcagggtaaggccaagagcaaaaagacaactgcaaagagatctgaggagagacaattgcggacaaatcccaaggttgttctttgcgactttgctaaaaattgtagcgcctgtagacgtggatgtggcgtcattttacctaaagatctcaagaacaaagctatgcgttgcttcaagcaatcgggacttcagtgttggcctggttgtgtgtttcataataaacctgaagaacagacttgcagtgcagttctggacgggaagaacatccgccaggttctgaatgaagaagttggcaataggcagatgccgctcagagaggccacagcgctcctccacagcaggttgagaaaccaagtctccacctctgctgttgcctcctcttcaaagcatgacagcgttggaaaccgctccacggacacatgttcagaaggggctggccccgtttctgaccagacggattcacaggcccacaaaagaatcaaccttggggaaatctctgggttcatccgctccagacacccagctgcaaagggaagcaacgctgctttgaagctttgtaaggagaatggacaccagacagaattatatggagcacaaatcccatcagaacccatctgtgagaaaaaccacaacgatatcccggagtctttcacctgccagagagtgaatgtgtacttcaggaaggcaccatattcatgcgctcgcaccaacatcgtctggcctttcggtaagggtcacctgagttcacatggacctttggcctcttcttcatcgaagggcgtcaatttctcagtgactgactctgtaaccgaggtcacaaatcaggtgggttcctccagcagtgccgcacttccagaaacacctttgagcaaacaggagggtggtgatgggaacgcggctgtactgtctgaaggtttaaccaacagccttcacttgcattcaaatcccactgacgacgatgatgaggatcgaacaccttcctccctggctaatgggctggaaacagacagcacctgcatgaccagctccacccttgctttttctccaccttcagacgcatccacccacggtgatcctaactgccttacatctcctttattcctgccattttcgacatatctgtctgaaaaagctgaggatgggctgaaagcagatgatacatccatgttccgttgtgaaccgtcccatctgagcacctggggttctccgtcttccttcacttcagaaaacctggactcatctcattctggtgaatcttctcttctgtttcctcaagacaaagaccagatcaacaattgtcctgcaggaaaaccggctttaaatggaaacgcagtccacctaaatagctcctctctgtgtagcttcctgaaggcgggctgcataaaagcggacacaaatcagtacatcctgccaacgctgctctctcctgttgcatcgccatgtagacctgcgtggaggaagagctgtgagcgtcaaagctcaagcagttctgatgaagaggagcaagcggaggacaagcagtcatctcctgaatgtcacaggctgcaaaaccaaactgaaggacattccagcggcaacagtactccaggaaaagccaggacttccctctggaacgttgaagatgagcgtgatggtaaggaggatgaatgtgatgaagatgggcaggctgtgggagctacgaaggaagatgcctcgcactctaaaacgaagagcccagccctatcacctgttcagaccaaggctccgccttgcgttggtgaggaggatccgcccactctggacgagatcacggcctatgaacacgacatcctgctggtggacgtgaaccaggatgaccctgacctgtttgtggattccccccaactaagtctgctgaggctgggtcccgtgcgggcttccgaggcccccaaaaagactgccccagctgccgcgaggctgccgtttgaagtgggcggagccccaggtaaagcagttcaaagcctgactcctgtgaggagggatttgtgcttcgaaggtcaggacacagcagcagagggtgacagcagaccgtggagacctcgctgcagcagcaccaccccacccagcacacagaatgcgtgccccactacagacgagcacagcagacgtgtggttcagtttgatgtcaacaacaaccatgcagacggcgtctttaaaaggatgcagcccatccagacggtcggctcttctctcagcatccccgcccagcatccatgggctagaaacgctgccggcgcggccaacttctggcgccagaagtccaattcttactgcagacagtatttcagtgagtcgctgacctgtgggttcaagatgtgccgcttccagcatctgcctgtggagggtgacgagaagttctgcgttgaaactgtgatgaggttcatcaaaaatccagcatgcctgcagaaagctggggctgtcttctccgggtactatcaaagcagcccaccgggggtgtacttctccatgcaggtgttcctgtccctcctctgggctctgctgaaagctgggatggtttctgatatcttctccattctgcgtgtcactttggcccacaacatagtgcccagccacgagttcctgctggacctttttgactttgtgcgggagaagtccctcacaggttttgtgcttgaactcctgcagctcaccgttaagatggtgaacgttggtctggagctcagcttggactgtgtgaaccacatgcctctgttccagcagacaattcatgcacacccaccagctgcagctactccacaccagaagtcgtctcccagcgctcctttaccggactgcctgagcttggctcacgccgtcattgaagtagagctctgcaccaaacaagaagactggaagcgcatgggcaaagtgttctgctccgtctgccagtcgagccatcaccccaaccaggtggagcgcatcagcggccgcattgccatcgcactgctctcagagagcaaagacaagctgtcgctgccctttgctgcctttgtggaaacagtgtttcagaacgaaggggagggaagcctggtgaagaactttgtcggcagaattggcgtctctttgatgttgagataccataaaacccaccagtggttgaagggtcgtgcggtggtggagatcatgtctgtctcaaaggtcagctacaccactacaaagggtttgtttgggaatgaggacagcgcatcacgctgcagcctggtcaccgtggcgacagagctgttcctactgagcggcagcgtggagggagcccttaacacactccgggagaacgcctggttcctgagctcctcctcctggccatgtgaccctccagatctggagaaccggactcgcgttttgaaacatctggctgagaagacgtctcacagagacactctggaggtcctcagtaacctgccaggaatcaaagaccccagtgagtgccctgacatctccaagtacgctcttctgttcaactctcacctgcaagcttgtgtggacagacagatactccctgtcgcttcagacacggtggacttcatgctgtcaaaaaagctccccgtagactacacgctgctgcagactctgttgcacaagctgggaaagcagaacctttggcttcgagcacgagaggtcttcaggcactccctgaaagcgggccactaccccggagtggtcgccccacctggtttcatgacgctggtcatcccctgtggacttggagaggtggagcaggtcctcacgctggagatgctcatcaccgttaatgcgtcgcacattctgcgtcttccagaatcctcctcctccactctcagcatcaccctcacaaggaccaacagctgtgagagcaactacctctctgcagggagccgcctcctcacagcagcttgcatcccgcaacccaaactcaccatccactacacagcggtgaactcctcccaggatcaagtcttcaagctggacgtctcctcggctcgccgctggctccgccacaatcatttgtgggccagtgaggtgtgggcacagtgaaaacgggacctcccccaaagcgtttcagcttcctgtcttgatcaggaaactcttcaaacacaatgaagtcagggactctcctgtagattcctgcagcctcctagttgaggctcgctgtcacagttcagttgaataaattccccccaaacactatactttcatcagtatcgcagtttacccacaccaagaagtgtatcactgtagcatatttctcttgtaagttcttcccatgttgacaatttcatattaaataaatccaaattgactgctg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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