LOCUS       XM_069694273            3577 bp    mRNA    linear   VRT 15-NOV-2024
DEFINITION  PREDICTED: Brachyistius frenatus vimentin-related 2 (vimr2),
            transcript variant X1, mRNA.
ACCESSION   XM_069694273
VERSION     XM_069694273.1
DBLINK      BioProject: PRJNA1182334
KEYWORDS    RefSeq.
SOURCE      Brachyistius frenatus (kelp perch)
  ORGANISM  Brachyistius frenatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Embiotocidae; Brachyistius.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_027210616) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_029030835.1-RS_2024_11
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 11/13/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3577
                     /organism="Brachyistius frenatus"
                     /mol_type="mRNA"
                     /isolate="BFR_SWC_R1_liver_20210118"
                     /isolation_source="ENVO:00002150"
                     /db_xref="taxon:100188"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="liver"
                     /geo_loc_name="USA: California, Carmel, Stillwater Cove"
                     /lat_lon="36.564821 N 121.943556 W"
                     /collection_date="2021-01-18"
     gene            1..3577
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins"
                     /db_xref="GeneID:138618516"
     CDS             1435..2664
                     /gene="vimr2"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_069550374.1"
                     /db_xref="GeneID:138618516"
                     /translation="

MAMLRVSSYRKLFEEQSWSRSGALSVQRPGPVRASARRAAVDECDCDKFDFVAAKTLNKEGLNRFVQDRTIIAALNDRLARLVELAHFFEEENESLECQIIELEEKLQSRQASSSITSTVAQPDYSLDAVVERLRRQRDEILCDTEELHKELEHLQKEYEMFAQQRIFIQQERQEVAEEVDAVTAECLGLREQVAIYEEQLANMEAQHKTSVESLVEPDEGTSGAVALKFCSPDITRALNIKEYYCQLAENLQYECGASSSAVVRRDDGKELEVGGTVGSTVKDLPEIKDASEMKMLISELEKELAELEKCNEELEDEVEMKKAAYVDEAAELKCTIDEMRQQETDFKAQMKEQCADYKELLSEKMAREMEIAAYRSLVEEEEGRLCCAACDLSLKSQTGLLDAPRHKD"

     polyA_site      3577
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gctgtgtttttgtgtaaattcagccgtgagccttacctctagttttttttttcagttcctcatgagttacaaaacacatctgttaagacactaacttcctggtcaaccagaatccagtgcgtactctaactctggttctcgatgtcttaaatggtgtaaatagtgattgtttccttatttcatgggtgtctgactgtatggtggtctgaatctgtgatccagtgtgtctacagtttgtcatgaaggtggtactgttgatgtctatttgttgacatgtctttttcctcatttctgccacatcttaaagctctttattcattgtttcgggactgtgtgatgccaacacgcagccattctggacgttatgataaattgtgatgaataatgctcttgctttaagtgatgcagcattttccgggtgcaagtttagcaagatttaatggctcattactctgcagggtacagccagtctttgtgctcctttctcatttgtgccacagaggacaattttttttttctgtagtaactgttgcaaaacatgtcctggttattgaaataaggaaccaatatccatgcctgatgaatatttcctctttactagtttagcccaagagatgtcagcattaatttcacatttatgatataaatttccctctgctcagtgtcttgtgtaaatgtagtgatgccagataaagcacagaggttttcttctcagacgccccaggatgtcagaagattttacctttggagacaatgtgagctcgtgacgtaatgtgaaaatgctgacaatcatggcagttgtgtaaatgcccgttcggctgaagttgctcctctttagtttcttctgcctcaaccatcagttccctttattcctctgttggctttaaagcccgaaggaatagttcccggtgattcatatttggtcattcactttgtcttgagaaatattaccctcatccaattaacagaaaaactagtataatcaatatcctctgattttaagtgttgtcttatgccactgtaccaactgatgtaatggtgtggattcatgttgatttctgtctccagtttgtcataaaattaaggtacacaaggaaacacttgttttcaacttttcagattttggtacttttaacttatttaaaagaaataaaactatgtagaaatctgtttttttttttgttctccatttcaacgccccctgtttgaaaatccttttgacagcctcttatgaagaacaacaactgctcagtagatttagggtgcttattccacaggtacatgagaaatcgttaccggctgatgttcgtgctatagttggtctgcgtcacctcagtgctacattctcgttccctgcgattataaaacccacctcggacccgctgccactgtttgcctgttgtgtttcatcccagtctgaaccgacctgcagccatggccatgctccgagtgtcttcttaccgcaagctgttcgaggaacagagctggagtcgaagtggagcgttgagtgtgcagcgtccaggaccggtacgggcctccgccaggagggcagcggttgacgagtgtgactgtgataagttcgacttcgtggctgctaagactctgaacaaggagggcctgaaccggtttgtccaggaccgcaccatcatcgctgccctcaacgaccgcctggcccggcttgttgaactggcccatttttttgaagaggagaatgagtcccttgagtgtcagatcattgaactagaggagaagctgcaaagtcgacaagcctcctccagcatcacgtccactgtggcgcagcctgactacagtctggatgcagtggtggaaagactgcgcaggcagagggatgagattctgtgtgacaccgaggagctgcacaaagagctcgaacatctgcaaaaagagtacgagatgtttgcacagcagaggatcttcatccagcaggaacgacaggaggttgctgaggaagtggatgctgtgacagctgagtgtttggggctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccagcacaagacgtcggtggagagtctcgtggagccagatgaagggacttcgggagcagtggctcttaaattttgcagccctgacatcacgcgggccttgaatataaaggagtactactgccagctggctgagaacctccagtatgagtgtggtgcttcctcctctgctgtggtccgacgtgatgatggaaaggagctggaagtgggaggaactgtcgggtcaacggtcaaagacttaccagagataaaggacgccagcgagatgaagatgctgatttcagagctggaaaaggagctcgctgagctcgagaagtgtaacgaggagctggaggacgaggttgaaatgaagaaggctgcatatgtggacgaagctgctgagttgaagtgtactatagatgaaatgaggcagcaggagaccgacttcaaagcacagatgaaggagcagtgtgcagactataaggagctgctcagtgagaagatggccagagagatggagatcgctgcgtacaggagtctggtggaggaagaggaggggaggctgtgctgtgctgcctgcgacttgagcctgaagagtcagactggcttgctggatgctccccgacacaaggattagaaaacagggcaaaaaggcaagcattggaaaacagaccccatatcagcacttcgatgaggtttaaggtacgaatgcagcaacgtgagcagatgtaaacttatcatgatagattaatgcagtctggaggtctgagccgggccactgataacaggtcgctggcagatgaccccgagactccaagaaagatggagctgtctaaaatgggtgggagtgtgtatccagtcagtgtctggcagtgatatttctttaagtgggtttttatctttaccagctcactgataattcataaatgttttgtcccctcatggacacacaccacatctgtgaagacaactggacttgctgaatgttcttgaagacctttcctgtcgtatctgaaagacatttctgaatctgatcatctcgacagacgtcacatcccaaactgggcgtcaccgaggacacattcccgctctgataccacctcgcccattcttcaaacttcgtctgattaccagctcttaacctgcgacccttcactgttaacaaacgtatcgacagctctcttttcagtaactcaaagcatccctttgctttcaaagtcgtgcgttcacgtcggtcctgacgttcaagtgtgcacggcaccgtgtttgcttttccagttgttcgtgaagttgttttccttcggctctttcaaaacaagcacctggatccttctacgagaaaactctgtgtgattcattatttcagtgtcccagtttgctgttcttccagaaataagcttttggtaatacattcttcggtaatcttttccttatttcctacacgatgttaaagctgtctgtgataaatcatttctggttccctgcctctgcacaagcatcaaaatgtattttagatttaaatgaaataaatgtatttgcttgagagatca

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