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2025-02-23 08:27:41, GGRNA.v2 : RefSeq release 228 (Jan, 2025)

LOCUS       XM_069458628            1849 bp    mRNA    linear   PRI 23-OCT-2024
DEFINITION  PREDICTED: Eulemur rufifrons vimentin (VIM), mRNA.
ACCESSION   XM_069458628
VERSION     XM_069458628.1
DBLINK      BioProject: PRJNA1166309
KEYWORDS    RefSeq.
SOURCE      Eulemur rufifrons (Bennett's brown lemur)
  ORGANISM  Eulemur rufifrons
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini;
            Lemuriformes; Lemuridae; Eulemur.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091007) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_041146395.1-RS_2024_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/03/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Eulemur rufifrons"
                     /mol_type="mRNA"
                     /isolate="Redbay"
                     /isolation_source="captive animal at Duke Lemur Center,
                     NC"
                     /db_xref="taxon:859984"
                     /chromosome="25"
                     /sex="female"
                     /tissue_type="kidney"
                     /dev_stage="adult"
                     /geo_loc_name="Madagascar"
                     /collection_date="2023-01-11"
     gene            1..1849
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 22 Proteins"
                     /db_xref="GeneID:138375260"
     CDS             131..1531
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_069314729.1"
                     /db_xref="GeneID:138375260"
                     /translation="
MSTRSVSSSSYRRMFGGPGTASRPSSNRSYVTSTTRTYSLGSALRPSTSRTLYASSPGGAYVTRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDILRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
ORIGIN      
tccggggtccccgcgccagagacgcagcagcgctcccaccgcccacacccgccgcgccctcgctcgcctcacctcccggagccagtgctccccaccgcagctgcccagcccaccgccaccctccgcagccatgtccaccaggtccgtgtcctcgtcctcctaccgtaggatgttcggtggccccggcaccgcgagccggccgagctccaaccggagctacgtgacctcgaccacccgcacctacagtctgggcagcgcgctgcgccccagcaccagccgcaccctctacgcctcgtccccgggcggcgcgtatgtcacgcgctcctcggccgtgcgcctgcggagcagcgtgccgggcgtgcggctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctcctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgaggacatcctgcggctccgggagaaattgcaggaggagatgcttcagagagaggaagccgagagcaccctgcaatctttcagacaggatgttgacaatgcgtctttggcacgtcttgaccttgaacgcaaagtggaatccttgcaagaagagattgcctttttgaagaaactacacgacgaggaaatccaagagctacaggcccagattcaggaacaacatgtccaaatcgatgtggatgtttccaagcctgacctcacggctgccctgcgtgacgtacgtcagcagtatgaaagcgtggcagccaagaaccttcaggaggcagaagagtggtacaagtccaagtttgctgacctctccgaggctgctaaccggaacaacgatgccttgcgccaagcgaagcaggagtccaatgagtaccggagacaggtgcagtccctcacctgcgaagtggatgctcttaaaggaactaacgagtccctggaacgccagatgcgtgaaatggaagagaactttgctgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatggctcgtcaccttcgtgaataccaagacctgctcaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcctccctgaacctgagagaaactaatctggattcactccctctggttgacacccactccaaaaggacccttctgattaagacggttgaaactagagatggacaggttatcaatgaaacttctcagcatcacgatgatcttgaatgaaaacctcacacactcagtgcagcaatatattaccagcaagaataaaaaagaaatccatatcttcaaggaacatcttccaagtgcctttctgcagtttttcaaaagcgcaagatagatttggagtagaaataagctctagttcttaaccaccgatactcctaaaagatttagaaaaaaagtttacaccataatctagtttatgaagaagtcttgtgctagaatactttttaaaaagtatttttgaatatcattaaaactgcttttttttctccagcaaatatccaatcaacttgtttttctgcttcaataaatctttgg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]