LOCUS       XM_069170585            2196 bp    mRNA    linear   VRT 16-OCT-2024
DEFINITION  PREDICTED: Embiotoca jacksoni vimentin-related 2 (vimr2),
            transcript variant X1, mRNA.
ACCESSION   XM_069170585
VERSION     XM_069170585.1
DBLINK      BioProject: PRJNA1170317
KEYWORDS    RefSeq.
SOURCE      Embiotoca jacksoni (black perch)
  ORGANISM  Embiotoca jacksoni
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Embiotocidae; Embiotoca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_027185403) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_022577435.1-RS_2024_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/11/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Embiotoca jacksoni"
                     /mol_type="mRNA"
                     /isolate="LCO1_2020_lvr"
                     /db_xref="taxon:100190"
                     /chromosome="Unknown"
                     /tissue_type="liver"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Leo Carillo, CA"
                     /lat_lon="34.04409 N 118.9339 W"
                     /collection_date="2020-08-26"
                     /collected_by="Giacomo Bernardi"
     gene            1..2196
                     /gene="vimr2"
                     /note="vimentin-related 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:138211032"
     CDS             53..1282
                     /gene="vimr2"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_069026686.1"
                     /db_xref="GeneID:138211032"
                     /translation="

MAMLRVSSYRKLFEEQSWSRSGALSVQRPGPVRASARRAAVDECDCDKFDFVAAKTLNKEGLNRFVQDRTIIAALNDRLARLVELAHFFEEENESLECQIIELEEKLQSRQASSSITSTVAQPDYSLDAVVERLRRQRDEILCDTEELHKELEHLQKEYEMFAQQRIFIQQERQEVAEEVDAVTAECLGLREQVAIYEEQLANMEAQHKTSVESLVEPDEGTSGAVALKFCSPDITRALNIKEYYCQLADNLQYECGASSSAVVRRDDGKELEVGGTVGSTVKDLPEIKDASEMKMLISELEKELAELEKCNEELEDEVEMKKAAYVDEAAELKCTIDEMRQQETDFKAQMKEQCADYKELLSEKMAREMEIAAYRSLVEEEEGRLCCAACDLSLKIQTGLLDAPRHKD"

     polyA_site      2196
                     /gene="vimr2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ctgccactgtttgcctgttgtgtttcatcccagtctgaaccgatccgcagccatggccatgctccgagtgtcttcttaccgcaagctgttcgaggaacagagctggagtcgaagtggagcgttgagtgtgcagcgtccaggaccggtacgggcctccgccaggagggcagcggttgacgagtgtgactgtgataagttcgacttcgtggctgctaagactctgaacaaggagggcctgaaccggtttgtccaggaccgcaccatcatcgctgccctcaacgaccgcctggcccggcttgttgaactggcccatttttttgaagaggagaatgagtcccttgagtgtcagatcattgaactagaggagaagctgcaaagtcgacaagcctcctccagcatcacgtccactgtggcgcagcctgactacagtctggatgcagtggtggaaagactgcgcaggcagagggatgagattctgtgtgacaccgaggagctgcacaaagagctcgaacatctgcaaaaagagtacgagatgtttgcacagcagaggatcttcatccagcaggaacgacaggaggttgctgaggaagtggatgctgtgacagctgagtgtttggggctgagggagcaagtggctatctacgaggagcagctggccaacatggaggcccagcacaagacgtcggtggagagtctcgtggagccagatgaagggacttcgggagcagtggctcttaaattttgcagccctgacatcacgcgggccttgaatataaaggagtactactgccagctggctgacaacctccagtatgagtgtggtgcttcctcctctgctgtggtccgacgtgatgatggaaaggagctggaagtgggaggaactgttgggtcaacggtcaaagacttaccagagataaaggacgccagcgagatgaagatgctgatttcagagctggaaaaggagctcgctgagctcgagaagtgtaacgaggagctggaggacgaggttgaaatgaagaaggctgcatatgtggacgaagctgctgagttgaagtgtactatagacgaaatgaggcagcaggagaccgacttcaaagcacagatgaaggagcagtgtgcagactataaggagctgctcagtgagaagatggccagagagatggagatcgctgcgtacaggagtctggtggaagaagaggaggggaggctgtgctgtgctgcctgcgacttgagcctgaagattcagactggcttgctggatgctccccgacacaaggattagaaaacagggcaaaaaggcaagcgttggaaaacagaccccatatcagcacttcgatgaggtttaaggtacgaatgcagcaacgtgagcagatgtaaacttatcatgatagattaatgcagtctggaggtctgagccgggccactgataacaggtcgctggcagatgaccccgagactccaagaaagatggagctgtctaaaatgggtgggagtgtgtatccagtcagtgtctggcagtgatatttcttttaagtgggtttttatctttaccagctcactgataattcataaatgttttgtcccctcatggacacacaccacatctgtgaagacaactggacttgctgaatgttcttgaagacctttcctgtcgtatctgaaagacatttctgaatctgatcatctcgacagacgtcacatcccaaactgggcgtcaccgaggacacattcccgctctgataccacctcgcccattcttcaaacttcgtctgattaccagctcttaacctgcgacccttcactgttaacaaacgtatcgacagctctcttttcagtaactcaaagcatccctttgctttcaaagtcgtgcgttcacgtcggtcccgacgttcaagtgtgcacagcaccgtgtttgcttttccagttgttcgtgaagttgttttccttcggctctttcaaaacaagcacctggatccttctacgagaaaactctgtgtgattcattatttcagtgtcccagtttgctgttcttccagaaataagcttttggtaatacattcttcggtaatcttttccttatttcctacacgatgttaaagctgtctgtgataaatcatttctggttccctgcctctgcacaagcatcaaaatgtattttagatttaaatgaaataaatgtatttgcttgagagatca

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