LOCUS       XM_069006718            2046 bp    mRNA    linear   VRT 05-OCT-2024
DEFINITION  PREDICTED: Aphelocoma coerulescens vimentin (VIM), mRNA.
ACCESSION   XM_069006718
VERSION     XM_069006718.1
DBLINK      BioProject: PRJNA1168067
KEYWORDS    RefSeq.
SOURCE      Aphelocoma coerulescens (scrub jay)
  ORGANISM  Aphelocoma coerulescens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves;
            Passeriformes; Corvoidea; Corvidae; Aphelocoma.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091015) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_041296385.1-RS_2024_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/04/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2046
                     /organism="Aphelocoma coerulescens"
                     /mol_type="mRNA"
                     /isolate="FSJ_1873_10779"
                     /db_xref="taxon:39617"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /geo_loc_name="USA: Florida, Venus, Archbold Biological
                     Station"
                     /lat_lon="27.18 N 81.35 W"
                     /collection_date="2021-07-13"
     gene            1..2046
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins"
                     /db_xref="GeneID:138106307"
     CDS             79..1458
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_068862819.1"
                     /db_xref="GeneID:138106307"
                     /translation="

MSISTKNSSYRRMFGGSSRPSTGTRYITSSTRYSLGSALRPSSARYVSASPGGMYASKTTSVRLRSSMPPMRLHDSVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFAALNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     polyA_site      2046
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

cggccaccgcccttcttcgccgcacgccccagtggtcgcgctccgctcccggattacaaagcccgcgccgccgtcgctatgagcatcagcacgaaaaactcctcgtaccgccgcatgttcggcgggagcagccgccccagcaccggcacccgctacatcacgtccagcacccggtactcgctgggcagtgccctgcggcccagcagcgcccggtacgtgtccgcctcgcccggcggcatgtatgccagcaagacgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgactccgtagacttctccctggccgacgccatcaacacggagtttaaggcgaaccgcactaatgagaaggttgagctgcaggagcttaatgaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcaaaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggtgacctctacgaggaggagatgcgggagctgcggcgacaggtggaccagctcaccaacgacaaggcacgcgtggaagtggagcgggacaacctcgccgacgacatcatgcggctgcgggagaagttgcaagaggagatgcttcagagggaggaggccgagaacaccctgcagtctttcagacaggatgttgacaatgcctctctggcacgtcttgatcttgagcgcaaagttgagtccctgcaagaggagattgtcttcttgaagaagcttcatgatgaggaaatccgagaattgcaggcccaactccaggaacagcacatccagattgatatggatgtttctaagcctgatcttactgctgccctgcgtgatgttcgccaacagtatgagagtgttgctgctaagaatctccaggaagctgaagaatggtacaagtccaaatttgcagatctctctgaagctgctaacaggaacaacgatgccctgcgccaggccaagcaggaagccaatgagtaccgcagacagatccagtctctcacctgtgaagtcgatgctcttaagggaagcaatgagtccctggagcgccaaatgcgtgaaatggaggagaactttgctgttgaagctgctaactaccaagacactattggccgtctgcaggatgagatccagaacatgaaggaagagatggctcgccatctccgcgagtaccaggacctgctgaatgtaaagatggcccttgatattgagattgccacctacagaaaactgctggagggtgaagagagcaggattaacatgcctattccaacctttgctgctttgaacctgagagaaaccaacattgagtctcagccaatggttgacactcactcaaagagaacacttctaattaagaccgtcgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaagctgaagtgatgatgcatacttactaaaggagaaattcttaccagcaagattgaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccatgagcgcaagatgattatgctaggaaataggtcttagatcttacaaactgactccctctgaaggattagagtttacaatggagcctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaattcaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaataaatctttggaaaatggctcttgatgtgttctaatttgttaacttcatgagtttctggaaagccataacaacataatgctggaattgttatacggttgacatctctagtactggctgtgtggaatgctgttttttcagtttaactagataaactgtcttactcactgcttaggttttggaaccaattaaaatggattataactggcagatgcataatgtattatgatatttcttatcacttgaataaaatacttcaagctaataaaaattaatcttgcttcca

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