LOCUS       XM_068934652            1837 bp    mRNA    linear   VRT 04-OCT-2024
DEFINITION  PREDICTED: Struthio camelus vimentin (VIM), mRNA.
ACCESSION   XM_068934652
VERSION     XM_068934652.1
DBLINK      BioProject: PRJNA1165802
KEYWORDS    RefSeq.
SOURCE      Struthio camelus (African ostrich)
  ORGANISM  Struthio camelus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Palaeognathae; Struthioniformes;
            Struthionidae; Struthio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_090943) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_040807025.1-RS_2024_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/02/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Struthio camelus"
                     /mol_type="mRNA"
                     /isolate="bStrCam1"
                     /db_xref="taxon:8801"
                     /chromosome="2"
                     /sex="female"
                     /tissue_type="embryonic fibroblast cells"
                     /dev_stage="embryo"
                     /geo_loc_name="USA: New York, NY"
                     /lat_lon="40.750519 N 73.967474 W"
                     /collection_date="2022-09-29"
                     /collected_by="Anna Keyte, Matthew Biegler"
     gene            1..1837
                     /gene="VIM"
                     /note="vimentin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4279 long SRA reads, 2
                     Proteins"
                     /db_xref="GeneID:104143301"
     CDS             136..1515
                     /gene="VIM"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_068790753.1"
                     /db_xref="GeneID:104143301"
                     /translation="

MSITTKNSSYRRMFGGGSRPSTGTRYITSSTRYSLGSALRPSSARYVSASPGGMYATKATSVRLRSSMPPMRLHDAVDFSLADAINTEFKANRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLADDIMRLREKLQEEMLQREEAENTLQTFRQDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"

     polyA_site      1837
                     /gene="VIM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gggcccggcagggggcgcggcgccccataagtagggcctggggcggcgccccccgctcttcttcgctcgcctctcgccgccgcgcagctgagccgccctcctccgctcccggattacaaagcccgcgccgccgccatgagcatcaccaccaagaactcctcgtaccgccggatgttcggcgggggcagccgccccagcaccggcacccgctacatcacctccagcacccgctactcgctgggcagcgccctgcgccccagcagcgctcgctacgtgtccgcctcgcccggcggcatgtacgccaccaaggcgacgtcggtgcggctgcggagcagcatgccgcccatgcggctccacgacgccgtggacttctcgctggcggacgccatcaacacggagttcaaggcgaaccgcaccaacgagaaggtggagctgcaggagctcaacgaccgctttgccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctggagcagctcaagggcaagggcacgtcccgcctgggcgacctctacgaggaggagatgcgggagctgcgccggcaggtcgaccagctcaccaacgacaaggcccgggtggaggtggagcgggacaacctcgccgacgacatcatgcggctgagggagaagttgcaggaggagatgctgcagcgggaggaggccgagaacaccctgcagaccttccgacaggatgttgacaatgcctccctggcacgtcttgatcttgagcgcaaagttgagtccctgcaagaagagattgtgttcttgaagaagcttcatgatgaggaaatcagagaactgcaagcccaactccaggaacagcacatccaaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgacgttcgccaacagtatgaaagcgttgctgctaagaatcttcaggaagctgaagaatggtacaagtccaaatttgcagatctctctgaagctgctaataggaacaacgatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcaatctcttacctgcgaagttgatgctcttaaaggaagcaatgaatccctggagcgccaaatgcgtgaaatggaggagaattttgctgttgaagctgctaactaccaagacactattggccgtctacaggatgagattcaaaacatgaaggaagaaatggctcgccatcttcgcgagtaccaggacctgctgaatgtaaagatggctcttgacattgagattgccacctacagaaaactgctggagggagaagagagcaggattaacatgcctattccaacctttgcttctctgaatctgagagaaaccaacatcgagtctcagccaatggttgacactcactcaaagaggacacttctaattaagaccgtcgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaaactgaagtgatgatgaataattaatgcaggagaacctcttaccagcaagatttaaaaagtccatttcttaaaggaagaaacagctttcaagtgcctttctgcagtttttccgtgagcgcaagattattatgctagaaaataggtcttagatcttgcaaactgactctccctgaaggattagagtttacaatggagtctagtttacaaatagcaatatcttgtgctgcaatactgtttttaagtatctgaatccaataaaactgctttttccagcacagtatgagcaacctgtcgctacttcaaataaatctttggaaaatg

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