GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-02-23 07:59:13, GGRNA.v2 : RefSeq release 228 (Jan, 2025)

LOCUS       XM_068636499            2267 bp    mRNA    linear   PLN 23-SEP-2024
DEFINITION  PREDICTED: Phaseolus vulgaris protein NETWORKED 4B-like
            (LOC137829649), transcript variant X2, mRNA.
ACCESSION   XM_068636499
VERSION     XM_068636499.1
DBLINK      BioProject: PRJNA240798
KEYWORDS    RefSeq.
SOURCE      Phaseolus vulgaris
  ORGANISM  Phaseolus vulgaris
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
            kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
            Phaseoleae; Phaseolus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_023753) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000499845.2-RS_2024_09
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 09/16/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Phaseolus vulgaris"
                     /mol_type="mRNA"
                     /cultivar="G19833"
                     /db_xref="taxon:3885"
                     /chromosome="7"
     gene            1..2267
                     /gene="LOC137829649"
                     /note="protein NETWORKED 4B-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 22
                     long SRA reads, 8 Proteins"
                     /db_xref="GeneID:137829649"
     CDS             380..2113
                     /gene="LOC137829649"
                     /codon_start=1
                     /product="protein NETWORKED 4B-like"
                     /protein_id="XP_068492600.1"
                     /db_xref="GeneID:137829649"
                     /translation="
MMKNQPSQWWWLESHNNTRRSPWLQSTLTELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVSMVEDFYRTHRSLVERYDQVTGIRQQKTGGSPFSPLKHHQPEKLMSFTDDNYDSYYESCDVEESGESEIDDPEQEEEEDTKFNNNAELEEVQFVAANDVMEIERLGEENKDHNDHNKQKYNIYEAVMLREEIEQLRKENRVQKDELNPKSIICGELLMLREEIGRLGKENRAEKDELNQKDIICGEAMMLREEIEQLGKENRVLKDEINQKSIICGEVMMLREEIEQLRKENRGQKDELNQKDIICGEAMLLREEIEQLGKENRVLKDELNQKSIICGEVMMLREEIEQLRKENREHKDELNQKDNICGEIMMLREEIEQLGKENGALKDELNQKYIICGEVMMLREEIQQLRKENRGQKDELDQIDINSEVTMSREEIEVYIKENRVKNDELKPKGNVCGEVVMLREEIERLRKDERAQKSTLCGEVMKLKQENSAQKDHLKKKDQEKIEVIRHLSLAIDMLKQENVKMRSFIAKESTNKWKNPFGFKNFMGSLSGQLFNGLTKNQPSLVAL"
     polyA_site      2267
                     /gene="LOC137829649"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
tttttttttctcctgtttaattttgtctcagttttgtttatttttatatttgtatgtatgtttttgtcttttaatttctcgaatttcgaaagttttctgctgaaggaagtgacattcttcggaggagtttatgtttgtctgtatgcggtgccttgtgaaagacgaagtggcagtgttagtgtgtctcagtcggtgcatttgtccttccatcaaacttgatatgtttgtttttttttttcatttgtatattgtgttgtgtgactttattttttatgcactgtgaatcgattaattatagttactaatctttgtgtgaaaacgatttcgtttacggtgctcttggtgttcgtgataacatagataactgaggagggctaaaatgatgaagaatcaaccgtcacagtggtggtggcttgagagccacaataacacaagacgatccccttggcttcaatccactctcacagagctaaatgagaagacaaaggcaatgttaaaactaattgaagaagatgcagattcctttgcccaacgtgcagagatgtattacaagaagagaccacagcttgtgagcatggttgaagatttctataggacacatcgatcattagttgagcggtatgatcaagtcactggaattcgtcagcagaagactggaggatcccccttttctccactcaagcatcatcaaccagagaagttgatgagttttactgatgacaattatgatagctattatgagagttgtgatgtggaggagtctggggaatctgaaattgacgatcctgagcaagaagaggaagaggatacaaaattcaataacaatgcagaactggaggaagttcagtttgtggctgcaaatgatgtgatggaaattgagagacttggtgaagagaacaaggatcataacgatcacaacaagcagaaatataacatttacgaagcagtgatgttgagggaagaaatagagcaactcagaaaagagaacagagttcagaaggatgaactcaacccgaaaagcatcatttgtggtgaattgttgatgctgagggaagaaataggacgactcggaaaggagaacagagcggagaaggatgaactcaaccagaaagatatcatttgtggtgaagcaatgatgttgagggaagaaatagaacaacttggtaaagagaacagagttctgaaggatgaaataaatcagaaaagtatcatttgtggtgaagtaatgatgttgagggaagaaatagagcaactcagaaaagagaatagagggcagaaggatgaactcaaccagaaagatatcatttgtggtgaagcaatgctgttgagggaagaaatagaacaactcggtaaggagaatagagttctgaaggatgaactaaatcagaaaagtatcatttgtggtgaagtaatgatgttgagggaagaaatagagcaactcagaaaagagaatagagaacataaggatgaactcaaccagaaagataacatttgcggtgaaataatgatgttgagggaagaaatagaacaattgggaaaagagaatggagcgctgaaggatgaactcaaccagaaatatatcatttgtggagaagtaatgatgttgagggaagaaatacaacaactcagaaaagagaatagagggcagaaggatgaactcgaccagatagatatcaatagtgaagtaacgatgtcgagggaagaaattgaagtatacataaaagagaatagagtcaagaatgatgaactcaagccgaaaggtaacgtttgtggtgaagtagtgatgttgagggaagaaatagaacgactcagaaaagatgaaagagcacaaaaaagtaccctttgtggtgaagtgatgaagttaaagcaagagaatagcgcacagaaggaccatctcaagaaaaaagaccaagagaaaatagaggtaataagacacctgagtttagctatagatatgctgaagcaggagaatgtaaagatgagaagcttcattgctaaggaatctaccaacaaatggaagaatccgtttggatttaagaatttcatgggatcattatcggggcagttgtttaatggacttacaaagaatcaacctagtcttgtagctctctagataaggttcacagagtaaatagctaagttttgtagaacaatattagaagagacctatgtacatgtcatggggacttgctcgagtaacctacagatcttgtatacagtttagtatattcctaacaaatccgagtctctagtggatttcctttgca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]