GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-15 13:20:18, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_067104617            2709 bp    mRNA    linear   INV 02-AUG-2024
DEFINITION  PREDICTED: Macrobrachium rosenbergii zinc finger CCCH
            domain-containing protein 13-like (LOC136838925), mRNA.
ACCESSION   XM_067104617
VERSION     XM_067104617.1
DBLINK      BioProject: PRJNA1134778
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Macrobrachium rosenbergii (giant freshwater prawn)
  ORGANISM  Macrobrachium rosenbergii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda;
            Pleocyemata; Caridea; Palaemonoidea; Palaemonidae; Macrobrachium.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089745) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_040412425.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/17/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2709
                     /organism="Macrobrachium rosenbergii"
                     /mol_type="mRNA"
                     /isolate="ZJJX-2024"
                     /db_xref="taxon:79674"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="whole blood"
                     /geo_loc_name="China: ZheJiang province, Jiaxing city"
                     /collection_date="2023-10-10"
     gene            1..2709
                     /gene="LOC136838925"
                     /note="zinc finger CCCH domain-containing protein 13-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 22 Proteins"
                     /db_xref="GeneID:136838925"
     CDS             1..2709
                     /gene="LOC136838925"
                     /codon_start=1
                     /product="zinc finger CCCH domain-containing protein
                     13-like"
                     /protein_id="XP_066960718.1"
                     /db_xref="GeneID:136838925"
                     /translation="
MELSSARRASRFCEIELNYGRRALRFYERELSSARRASRFYERELSSARRASRFYERELSSARRASSFDETELSSARRASRFYERELSSARRVSRFYERELSSARRASRFYERELSSARRASRFYERELSSARRASRFYERELSSARRASRFYERKLSSARRASSFHEREIICARRTSRFYERELSSARWASCFKEMELSSARRASRFDERELSSARRASRFDEMEFSSARRASRFYERELNYARRASRFYERELSSARRASSFNEMELNSARRASRFCEIELSSSRRASRFYERELSSARRSSSFDERELSSARRASRFYERELSSARRVSRFYERELSSARRASRFYERELSSARRVSSFDERELSSARRVSRFYERELSSVRRVSRFYERELSSARRASSFDERELSSARRASRFYERELSSAIRSSSFNEMELNSARRVSRFYDIELSYGRRASSFDERELSSARRASRYYERELSSARRASRFYERELSSARRASSFDERELSSARRTSRFYERELRSARRASSFDERELSSARRTSSFDERELISARRVSRFYERELSSARRASRLYERELSSARRTSRFYERELRSARRASRFYERELSSARRASRFYGRELRSARRASSFDERELSSARRASRFYERELSSARGASRFYERELSCARRASGFDERELSSARRASRFYERELSSARRASRFYERELSSARRASSSARRASSFDERELSSARRASRFYERELSSARRTSSFNERELSSARRASSFDERELSSARRASRFYERELSSARRASSFDERELSSARRASSFDERELSSARRASRFYERELSSARRASRFYERELSSARRASRFYERELSSARRASRFYERELSSARRASRFYGRELRSARRASSSDERELSPSRKASSFD"
ORIGIN      
atggaattaagctctgcaagaagagcatcaaggttctgtgaaatagaattaaactatggaagaagagcactaaggttctatgaaagggaattaagctctgcaagaagggcatcaaggttctatgaaagggaattaagctctgcaagaagggcatcaaggttttatgaaagggaattaagctctgcaagaagggcatcaagcttcgatgaaacggaactaagctctgcaagaagagcatctaggttttatgaaagggaattaagctctgcaagaagggtatcaaggttttatgaaagggaattaagctctgcaagaagggcatcaaggttctatgaaagggaactaagctctgcaagaagggcatcaaggttctatgaaagggaattaagctctgcaagaagggcatcaaggttctatgaaagggaattaagctctgcaagaagggcatcaaggttctatgaaaggaaattaagctctgcaagaagggcatcaagcttccatgaaagggaaataatctgtgcaagaaggacatcaaggttctatgaaagggaattaagctctgcaagatgggcatcatgcttcaaagaaatggaattaagctctgcaagaagggcatcaaggttcgatgaaagggaattaagttctgcaagaagggcatcaaggtttgatgaaatggaattcagctctgcaagaagagcttcaaggttctatgaaagggaattaaattatgcaagaagagcttcaaggttctatgaaagggaattaagctctgcaagaagggcatcaagcttcaatgaaatggaattaaactctgcaagaagagcatcaaggttctgtgaaatagaattaagctcttcaagaagggcatcaaggttttatgaaagggaattaagctctgcaagaaggtcatcaagcttcgatgaaagggaattaagctctgcaagaagagcatcaaggttttatgaaagggaattaagctctgcaagaagggtatcaaggttttatgaaagggaattaagctctgcaagaagggcatcaaggttttatgaaagggaattaagctctgcaagaagggtatcaagcttcgatgaaagggaattaagctctgcaagaagagtatcaaggttttatgaaagggaattaagctctgtaagaagggtatcaaggttttatgaaagggaattaagctctgcaagaagggcatcaagcttcgatgaaagggaattaagctctgcaagaagagcatcaaggttttatgaaagggaattaagctctgcaataaggtcatcaagcttcaatgaaatggaattaaactctgcaagaagagtatcaaggttctatgacatagaattaagctatggaagaagagcatcaagctttgatgaaagggaattaagctctgcaagaagggcatcaaggtactatgaaagggaattaagctctgcaagaagagcatcaaggttttatgaaagggaattaagctctgcaagaagggcatcaagcttcgatgaaagggaattaagctctgcaagaaggacatcaaggttttatgaaagggaattaagatctgcaagaagagcatcaagcttcgatgaaagggaattaagctctgcaagaaggacatcaagcttcgatgaaagggaattaatctctgcaagaagggtatcaaggttctatgaaagggaattaagctctgcaagaagggcatcaaggctctatgaaagggaattaagctctgcaagaagaacatcaaggttctatgaaagggaattaagatctgcaagaagagcatcaaggttttatgaaagggaattaagctctgcaagaagagcatcaaggttttatggaagggaattaagatctgcaagaagggcgtcaagcttcgatgaaagggagttaagctctgcaagaagagcatcaaggttttatgaaagggaattaagctccgcaagaggggcatctaggttttatgaaagggaattaagctgtgcaagaagggcatcaggcttcgatgaaagggaattaagctctgcaagaagagcatcaagattctatgaaagggaattaagctctgcaagaagggcatcaaggttctatgaaagggaattaagctctgcaagaagggcatcaagctctgcaagaagagcatcaagcttcgatgaaagggaattaagctctgcaagaagagcatcaaggttttatgagagggaattaagctctgcgagaaggacatcaagcttcaatgaaagggaactaagctctgcaagaagagcatcaagctttgatgaaagggaattaagctctgcaagaagagcatcaaggttctatgaaagggaattaagctctgcaagaagggcatcaagcttcgatgaaagggaattaagctctgcaagaagagcatcaagctttgatgaaagggaattaagctctgcaagaagggcatcaaggttctatgaaagggaattaagctctgcaagaagggcatcaaggttctatgaaagggaattaagctctgcaagaagagcatcaaggttctatgaaagggaattaagctctgcaagaagggcatcaaggttctatgaaagggaattaagctctgcaagaagagcatcaaggttttatggaagggaattaagatctgcaagaagggcatcaagctccgatgaaagggaattaagcccttcaagaaaggcttcaagcttcgattga
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]