GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-15 18:23:56, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_066818019            3150 bp    mRNA    linear   PLN 31-JUL-2024
DEFINITION  Apiospora hydei protein argonaute (PG997_013705), partial mRNA.
ACCESSION   XM_066818019
VERSION     XM_066818019.1
DBLINK      BioProject: PRJNA1140273
            BioSample: SAMN32723710
KEYWORDS    RefSeq.
SOURCE      Apiospora hydei
  ORGANISM  Apiospora hydei
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Xylariomycetidae; Xylariales; Apiosporaceae;
            Apiospora.
REFERENCE   1  (bases 1 to 3150)
  AUTHORS   Sorensen,T.
  TITLE     Analysis of 21 Apiospora genomes using comparative genomics revels
            a genus with tremendous synthesis potential of carbohydrate active
            enzymes and secondary metabolites
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3150)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JUL-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3150)
  AUTHORS   Sorensen,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2023) Department of Biosciences and Chemistry,
            Aalborg university, Fredrik Bajers Vej 7H, Aalborg, Nordjylland
            9220, Denmark
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_027117368).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3150
                     /organism="Apiospora hydei"
                     /mol_type="mRNA"
                     /strain="CBS 114990"
                     /culture_collection="CBS:114990"
                     /type_material="culture from type material of Arthrinium
                     hydei"
                     /db_xref="taxon:1337664"
                     /chromosome="Unknown"
     gene            <1..>3150
                     /locus_tag="PG997_013705"
                     /db_xref="GeneID:92051079"
     CDS             <1..3150
                     /locus_tag="PG997_013705"
                     /note="Argonaute linker 1 domain; Argonaute linker 2
                     domain; consensus disorder prediction; Mid domain of
                     argonaute; N-terminal domain of argonaute; PAZ domain; PAZ
                     domain profile.; PAZ_argonaute_like; Piwi domain; Piwi
                     domain profile.; Piwi_ago-like"
                     /codon_start=1
                     /product="protein argonaute"
                     /protein_id="XP_066663711.1"
                     /db_xref="GeneID:92051079"
                     /translation="
SSTKSIITTTMSGFNQQGNGPRHAAIERVAGMNLDGSSDRGSVSGSPSRGSHHSRSGSNAGSQTGSQAGEGSRSRSGSTASGPVKQQSPFPPGTGVDPARMGGDGREPLTDEQLIGKRIDLPAEAYKKFDGSFTQFAKRPGFSTDGKGIQVQVNIFPVTKWPTGDIVQYDVNVSPNDKDSRALVRKVWESAPVQAELKKTGSKWLFDGHKLACELRSTAKFPRGEARVAVDLDRLAGKEPRPGKTGVYYIQIRQATSIRMQVLQDYLKRKCDWDKSVLQCMNFLDHLLRQYPSENMISIKRNFYNKKDNPMRLDSYTDVRKGTYSAFRLCEMNNMSKGSGLAVNVDVANTAFWNTMGTLADTARAMLSPPSAQNEKQMVPWPKMAEILRPVQARDRNGNIVWQQSEPFQKLRRLAKLKITVNHRGKDQSDKVYTIKRIAFEQSMANWGADAQHYTFQRKHKDGKVDPPITIHNYFMQKYKARLQYPDLPLIETMRDGFYPMEACRLQPFQRYTYKLDPEQTSKMIKFAVTRPVQRSAAINTCMQGLHWESDPYFKQYGLQIAQRMLVTPARLLQNPEVHFSGSKINPGMTGRWDLRGKKFLESNPVPIQSWAFIGVGSNDGYTVQEDALKNFAQTFKRAYGQHGGVIRKDPFVKVYPFNVPYPQMCEQAYKECGQHFKATPQVIFFVVSTRNSLVYERIKKNMDCRFCTVSQVMLADHVRKANLQYCGNVAMKVNAKLGGVTCRAAPMGVTSPMPYYSVPTMIIGLDVSHAAPGSGRPSMAAMTVSTDKTATRYAASVQTNGYRGEIVEGINMRFLLGRLLKYWINTNKCHPKHVYFFRDGVAEGQFGQVIDKEIKEIKRIFRDAGCEVPRVTVMIATKRHHIRFFPNPQDKGSADKNANPLPGTVVEHDATHPFHWDFYLSSHVAIQGTARPVHYQVILDEANCNPNDLQRMLYHHCYQYQRSTTPVSLHPAVYYSHLASVRAASHEDIAASQKELPSGKAGFPLAKAPSTVYGSGGQNREAPPLLAMENPIADKANIAHINTTMWYV"
ORIGIN      
tcgtcaaccaagtccatcatcaccaccacgatgtcgggtttcaaccagcagggcaatggtccgcgacacgccgccattgagcgtgtcgccggcatgaaccttgatggatcttctgatcgtggctctgtcagcggcagtccttcgcgtggttctcaccactcacgctcgggctccaatgcgggtagccagactggaagccaagctggcgagggctcccgctcccgatcgggctctaccgccagtggacctgtcaagcagcagtcacctttccctcctggaactggtgttgatcccgctcgcatgggcggtgacggacgtgagccgcttaccgatgagcagctcattggcaagcgaattgatcttcccgctgaggcctacaagaagtttgatggatcgttcactcagttcgccaagcgacctggcttcagcaccgatggcaagggtattcaggttcaagtcaacatctttccggtgacaaagtggcccaccggagatatcgtccaatatgatgtcaacgtcagccccaatgataaggactcccgagccctcgtcagaaaggtctgggagagcgccccagtccaggctgagctgaagaagactggcagcaagtggctgtttgacggtcacaagctcgcttgtgagcttaggtctacggctaaattccctcgtggagaggcacgagttgctgtcgatctggaccgacttgcaggcaaggagccccgacctggcaagactggtgtatattatattcagattagacaggcaacgtcgattcgcatgcaggtccttcaggactatcttaaacgcaaatgcgattgggacaagtctgtacttcagtgcatgaacttcctggaccatctcttgcgccagtatcccagcgagaacatgatctctatcaagcgtaacttctacaacaagaaggacaacccaatgcgtctcgactcctacaccgatgtccgcaagggcacttactccgctttccgtctgtgtgagatgaataacatgagcaagggtagtggcttggcagtcaatgtggatgtggccaacacagcgttctggaacactatgggaacactggccgatacggcacgtgccatgctgagtccgccctcagctcagaacgagaagcaaatggttccgtggcccaagatggctgagatcctgcgacctgtccaggcacgtgacaggaatggaaacatcgtctggcagcagtcagagcctttccagaagctccgtcgcttggcgaagctcaagatcaccgtcaaccaccgtggcaaagaccagagcgataaggtctacaccatcaagcgaatcgcctttgagcagagcatggccaactggggtgccgatgctcagcactacaccttccagcggaagcataaggacggcaaggtggaccctcccatcactattcataattacttcatgcagaagtataaggcccgcctgcagtacccggatcttccactgatcgagacaatgcgtgatggcttctacccaatggaagcctgtcgtcttcaaccattccagcgatatacatacaagctggatccggagcagacatccaagatgatcaagtttgccgtcacccggcccgttcagcgtagtgctgcaatcaacacttgcatgcaaggtcttcactgggaatccgatccctatttcaagcagtatggtctgcagattgcccagcgaatgctcgtcaccccagcccggctgctgcagaacccagaggtccatttctccgggtcgaagattaaccctggcatgactggccgctgggacctccgaggtaaaaagttcctggagtccaatcctgtgcccatccagtcctgggccttcattggcgtcgggtccaatgacggttacaccgttcaggaggatgcgctcaagaactttgcccagacgttcaagcgcgcttatggtcaacatggtggcgtgatccgaaaggacccgttcgtcaaggtgtaccccttcaacgtcccgtaccctcagatgtgcgagcaggcgtacaaggagtgtggtcagcacttcaaggccaccccccaggtcatcttctttgtggtcagcactcgcaactccttggtctatgagcgaatcaagaagaacatggactgccgattctgcaccgttagccaagttatgctggcagatcacgtccgcaaggccaacctccagtactgcggcaacgtggcgatgaaggtcaatgccaagcttggaggtgtcacctgtcgagccgcccctatgggtgtgacttcccccatgccgtactactccgtccccaccatgatcatcggcttggacgtctcccacgctgctcccggtagtggtcgaccctcgatggcagccatgaccgtgtctaccgacaaaaccgctacccgatacgccgcctctgtccaaacaaacggctatcgtggcgagattgtggaaggcatcaatatgcgctttctgcttggccgtctcttgaaatactggatcaacacaaacaagtgtcatcccaagcatgtctacttcttccgagatggagttgcagagggtcagttcggtcaagtcattgacaaggagatcaaggagatcaagcgcatcttccgagacgccggttgtgaggtccctcgtgtcacggtcatgattgccaccaagcgccaccacatccgctttttcccgaacccccaggacaagggctcagctgacaagaatgccaaccctctccctggcacagtggtggagcacgatgccacgcaccccttccactgggacttctacctgtcatcccacgttgccattcaaggtactgcccgacctgtgcactaccaggtaatcttggatgaagcaaactgcaaccctaatgacttgcagcgaatgctgtatcatcactgctaccagtaccagcgatcaacaaccccggtctctctgcatcccgccgtgtactactcgcatttggcatcggtccgtgctgcttcccatgaggacattgcagccagtcagaaggagcttccctctggaaaggctggtttccccttggccaaggcaccctcgactgtctatggatccggaggacaaaaccgcgaggcgcctcctctgcttgccatggagaaccccattgccgacaaggctaacattgcccacatcaacactaccatgtggtacgtctaa
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]