GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-11-15 17:25:54, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       XM_066277167            1246 bp    mRNA    linear   MAM 05-JUL-2024
DEFINITION  PREDICTED: Saccopteryx bilineata Meis homeobox 2 (MEIS2),
            transcript variant X6, mRNA.
ACCESSION   XM_066277167
VERSION     XM_066277167.1
DBLINK      BioProject: PRJNA1130893
KEYWORDS    RefSeq.
SOURCE      Saccopteryx bilineata (greater sac-winged bat)
  ORGANISM  Saccopteryx bilineata
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera;
            Emballonuridae; Emballonurinae; Saccopteryx.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089493) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036850765.1-RS_2024_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/03/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Saccopteryx bilineata"
                     /mol_type="mRNA"
                     /isolate="mSacBil1"
                     /db_xref="taxon:59482"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="liver"
                     /dev_stage="adult"
                     /geo_loc_name="Suriname: Sabajo"
                     /collection_date="2017-09-20"
                     /collected_by="Burton Lim"
     gene            1..1246
                     /gene="MEIS2"
                     /note="Meis homeobox 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein"
                     /db_xref="GeneID:136335932"
     CDS             128..1069
                     /gene="MEIS2"
                     /codon_start=1
                     /product="homeobox protein Meis2 isoform X6"
                     /protein_id="XP_066133264.1"
                     /db_xref="GeneID:136335932"
                     /translation="
MALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPASWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM"
     misc_feature    191..445
                     /gene="MEIS2"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(707..709,836..838,845..850,857..859)
                     /gene="MEIS2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    746..862
                     /gene="MEIS2"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      
ctgaaccacgggccgccactccacgccacgcagcactacggcgcgcacgccccacaccccaatgtcatgcccgccagtatgggatccgctgtcaacgacgccttgaagcgggacaaggacgcgatctatggctctggtctttgagaagtgcgagctggcgacctgcactccccgggaacccggagtggccggcggagacgtctgctcctccgactccttcaacgaggacatcgcggtcttcgccaagcaggttcgcgccgaaaagccacttttttcctcaaatccagagctggacaatttgatgatacaagcaatacaagtactaaggtttcatcttttggagttagaaaaggtccacgaactgtgcgataacttctgccaccggtacattagctgtttgaaggggaaaatgcccattgaccttgtcattgatgaaagagacggcagctccaagtcagatcacgaagaactttcaggctcctccacaaatcttgctgatcataatcctgcatcttggcgagatcatgatgacgcaacctctacccactcagcaggcaccccggggccctccagtgggggtcatgcttcccagagtggagacaacagcagtgagcaaggggatggtttagacaacagtgtagcttcacctggcacaggtgacgatgatgatccagacaaggacaaaaaacgtcagaagaaaagaggcattttccccaaagtagcaacaaatatcatgagagcatggctcttccagcatctcacacatccatacccttccgaggagcagaagaaacagttagcgcaagacacaggacttacaattctccaagtaaacaactggtttattaatgccagaagaagaatagtacagccaatgattgaccagtcaaaccgagcaggttttcttcttgatccttcagtgagccaaggagcagcatatagtccagaaggtcagcccatggggagctttgtgctggatggtcagcaacacatgggaatccggcctgcaggacctatgagtggaatgggcatgaatatgggcatggatgggcagtggcactacatgtaaccttcaccatgtaaagcaatcgcaaagccagggggaagtttgcagagcatgccaggggactacgtttctcagggtggtcctatgggaatgagtatggcacagccgagttacactcctccccaaatgaccccacaccctactcaattaagacatggacccccaatgcattcatatttg
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]