2025-04-23 19:33:25, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS XM_065960072 2970 bp mRNA linear VRT 24-JUN-2024 DEFINITION PREDICTED: Labrus bergylta ClpB family mitochondrial disaggregase (clpb), mRNA. ACCESSION XM_065960072 VERSION XM_065960072.1 DBLINK BioProject: PRJNA1126594 KEYWORDS RefSeq. SOURCE Labrus bergylta (ballan wrasse) ORGANISM Labrus bergylta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_089205) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963930695.1-RS_2024_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/21/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2970 /organism="Labrus bergylta" /mol_type="mRNA" /db_xref="taxon:56723" /chromosome="11" gene 1..2970 /gene="clpb" /note="ClpB family mitochondrial disaggregase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:109989860" CDS 762..2804 /gene="clpb" /codon_start=1 /product="mitochondrial disaggregase" /protein_id="XP_065816144.1" /db_xref="GeneID:109989860" /translation="
MLSSVPTRLIARRSRSLSPCSRVLQTSAGGAACQGIRETPTETNRNPIVSTSRVSRRGILSDESAGCSTNLNPSMQFHNLAPRWLSNLENRRSSWAALASRGRGNNQYWEESGQKGGGEGRGTGGGANRTGVASVGVLSAAAVAFCLKKDSDNKGDTLLEAARTNNSEDVARLLKEGVDPNHRHRLGWTPLMVAAINRQHSVVKVLLEAGADPNTGDHFNNVYDTSREKGIHSLEVLVSREDEFSSRLSSRAGFRGCTALHYATLADDTLAVRMLLEAGANPLQSNGLGHTARAYAKEGDVSAVLQEWEGKFQEAQARREAEERRRFPLERRLKEYIIGQEGAINTVASAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQVARYMHKDVKKGFIRMDMSEFQEKHEVAKFIGSPPGYVGHEEGGQLTKLLKACPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIECKDAIFIMTSNVASDEIAEHALQLRQEAEQVSRRKLADNLQDVQKTDDIKISRQFKESVIRPILKSQFRRDEFLGRINEIVYFLPFCHSELLQLVGKELSFWAKKAKQRHDITLQWDRPVLDLLAGGYNMHYGARSIKHEVERRVVNQLAAAYEQELLPKGCTLRLSVQSEDEEERSAPSLRLEVLGEDSSSRMLDIRPPLSPEH"
polyA_site 2970 /gene="clpb" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aatctatccagacaatcatttttttctgctaacattgaagacatttgaagaaataaggacattggcttctgcagttactattcagcaacaaaccttaatgccatgtgcttttaccgccatctggcggccatgactaatgcactgtcaaaaaaacacttgcatcatcacgttttctgtttaagaaaggacgagaaaaccaaacaaccatgaccgtgtcacgagatgggctgaataccaagttaatcatgaaaatagaatacatagaacctggcaaaaacaataatttaggaaagctgcaaacatttataagccatgggaataattttagtagcagtagtaattgcgcttgacacactgagcatgcgcaaagatgactgactgcaagcttccttaacctttctgtcttgaagcctttcattgaacttttttttgcagaaatgtcgcccctaaaaagcaatagaaacatgacaaatcactgaatcatgtgcacctcattaattacagttcaagacattaaacacggaagcacgcctcagtaaaacaccatttcccagaatgcaccgcgcattctagtgacatctacgcgacgatgaggtgaagcagttgttttcgttgccataagctacctgtttcttgaagtgtagcggcagatacatcgctagttacgcggtgtccccgatctgtagggaacccgttaccatctggaattacttcctgactgagcctttcatccctgcctctttttcggtgagtttaccgccatgttatcatcagttcccaccaggctaattgcgcgaaggtcgcgcagcctgtcaccatgcagccgtgtgctccagaccagcgcaggcggtgccgcatgtcagggcatccgagagacacctacggagactaaccgtaaccccatcgtgtccacctcccgggtctccagaaggggtattttgtctgatgaaagtgctggttgtagcaccaatctgaatccgtcgatgcagttccacaacctcgcccctagatggctgtccaacctggagaaccgccgcagctcctgggcggctctggccagcagagggcgcggcaataaccagtactgggaggagagcgggcagaaaggtggaggtgagggcaggggaacaggtggaggagccaaccggacaggagtggcctctgtcggtgttctctctgctgcagctgttgccttctgcctgaagaaggattcagataacaaaggcgatacacttctggaggcagcaaggaccaataattctgaagatgtggcaaggctgttgaaagagggggttgacccaaatcaccggcaccgtcttggttggactcctctcatggtggctgcaataaaccgacagcacagtgtggtgaaggttctgctcgaagccggtgccgacccgaacactggagatcacttcaacaacgtttacgacacctcacgggagaaaggcatccactcactggaagtccttgtgtccagagaggatgaattcagcagcaggctcagcagcagggctggcttccgtggttgcacagcgcttcactacgccacgctggctgatgacacactcgctgtccgcatgctgctggaggctggtgcaaaccctctgcaatccaacggtttgggacacacggcgcgggcctacgctaaggagggagacgtgagtgcagtgctgcaggagtgggagggcaagttccaggaggcacaggctcggcgggaggcagaggagaggagaaggttccccctggagaggaggctgaaggagtatatcatcggacaggagggggccatcaatactgtggcctcagccattaggaggaaggagaatggttggtacgatgaagagcatcctcttgtgttcctcttcctcggctcatcaggaatcggaaagacagagttggccaaacaggtggctcgctacatgcacaaagacgtcaaaaagggatttattcgtatggacatgtcggagttccaggaaaaacacgaggtggcaaaatttatcggttctcctccggggtacgtgggacatgaggaagggggtcagctgaccaaactgttgaaggcgtgtcccaacgctgtagtcctctttgatgaagtagacaaggcccacccggacgttcttaccatcatgctgcagctctttgatgagggtcgcctcacagatggtaagggaaagaccattgagtgtaaagacgccatcttcatcatgacttctaatgttgcaagcgacgaaatcgccgagcatgctctgcagcttcgccaggaggccgagcaggtcagccgcagaaagctggccgacaacctgcaggacgtacagaaaactgatgacatcaaaatctctcggcagtttaaagaatctgtgattcgaccaatcctgaagtctcagttccggagggacgagtttctcgggcggataaatgagattgtgtacttcttgccgttctgtcactcagagctgctgcagctggtcggcaaagagctcagcttctgggctaaaaaggctaagcagcgccatgacatcactcttcagtgggatcgcccagttttggacctgttggcgggcgggtataacatgcactacggagcacgatctatcaaacatgaggtcgagcgacgagtcgtcaaccagttagctgcagcgtacgagcaggagcttctacccaaaggctgcaccctgcgtctgtctgtccaatcagaggatgaagaggagcggagtgcgcccagtctgcgcctcgaggtactaggagaggatagctcttcgagaatgctggacattcgaccaccgctcagtcctgaacactaacacacacacacaagaacacagaggaagtacacagatatttatgcccatatgtacaactacaccataccatcatcatcatcatcatcgtcgtcataacctatcatccagtgtcaggaggatggatagtttttggttcttattaccaataaaagtacctctgataaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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